LOCUS AJ250014 5371 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for Familial Cylindromatosis cyld gene.
ACCESSION AJ250014
VERSION AJ250014.1
KEYWORDS cyld gene; Familial Cylindromatosis.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5371)
AUTHORS Stratton M.R.
JOURNAL Submitted (29-NOV-1999) to the INSDC. Stratton M.R., Cancer
Genetics, Institute of Cancer Research, 15 Cotswold Rd, Sutton,,
Surrey. SM2 5NG., UNITED KINGDOM.
REFERENCE 2
AUTHORS Bignell G.R., Brown C., Biggs P.J., Lakhani S.R., Jones C.,
Hansen J., Blair E., Hofmann B., Siebert R., Turner G., Evans D.G.,
Schrander-Stumpel C., Beemer F.A., Van Den Ouweland A., Halley D.,
Delpech B., Cleveland M.G., Leigh I., Leisti J., Rasmussen S.,
Wallace M.R., Fenske C., Banerjee P., Oiso N., Chaggar R.,
Merrett S., Leonard N., Huber M., Hohl D., Chapman P., Burn J.,
Swift S., Smith A., Ashworth A., Stratton M.R.
TITLE Identification of the familial cylindromatosis tumour-suppressor
gene
JOURNAL Nat Genet 25(2), 160-165(2000).
PUBMED 10835629
FEATURES Location/Qualifiers
source 1..5371
/db_xref="H-InvDB:HIT000245961"
/organism="Homo sapiens"
/chromosome="16"
/map="16q12 - q13"
/mol_type="mRNA"
/db_xref="taxon:9606"
CDS 392..3262
/gene="cyld"
/function="tumour suppressor/recessive oncogene"
/note="Familial Cylindromatosis Gene"
/db_xref="GOA:Q9NQC7"
/db_xref="H-InvDB:HIT000245961.14"
/db_xref="HGNC:HGNC:2584"
/db_xref="InterPro:IPR000938"
/db_xref="InterPro:IPR001394"
/db_xref="InterPro:IPR018200"
/db_xref="InterPro:IPR028889"
/db_xref="InterPro:IPR036859"
/db_xref="InterPro:IPR038765"
/db_xref="PDB:1IXD"
/db_xref="PDB:1WHL"
/db_xref="PDB:1WHM"
/db_xref="PDB:2VHF"
/db_xref="UniProtKB/Swiss-Prot:Q9NQC7"
/experiment="experimental evidence, no additional details
recorded"
/protein_id="CAB93533.1"
/translation="MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKG
SIGQYIQDRSVGHSRIPSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLA
ITNCEERFSLFKNRNRLSKGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSG
IFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAG
PGDTMQVELPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNW
DGRFDGVQLCSFACVESTILLHINDIIPALSESVTQERRPPKLAFMSRGVGDKGSSSH
NKPKATGSTSDPGNRNRSELFYTLNGSSVDSQPQSKSKNTWYIDEVAEDPAKSLTEIS
TDFDRSSPPLQPPPVNSLTTENRFHSLPFSLTKMPNTNGSIGHSPLSLSAQSVMEELN
TAPVQESPPLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELED
ECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPVSNQIERCNSLAFGGY
LSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRP
KEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDP
EEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFIN
SNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYE
CRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPC
QNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNIPQVTPCPEVGE
YLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK"
BASE COUNT 1600 a 950 c 1183 g 1638 t
ORIGIN
1 gggggcgggc ccaggtagca ggtttggctg cgcgggggcc gcgcgtcgga gtttccccct
61 ttctagggtg aggatggttc tacacagcca cccggagttc cttagttgaa aggtgcgccc
121 tgctgtgaca gaatgtggta attgtaatct ttaacatttt catgtaaaac atatttcctg
181 atcatctttc cattgtcttc atggaaaatt gataaatatt tgtgccttcc aactctcgtc
241 ttggttgaat gacttcatct taatacaaca tggacaccac gttgctgaaa acatgctttg
301 ggactgccac tgaatttatc ttttgcggtt ttatgacaaa gttattagta gtttcccttt
361 tttgaattag tattttgaag ttaatatcac aatgagttca ggcttatgga gccaagaaaa
421 agtcacttca ccctactggg aagagcggat tttttacttg cttcttcaag aatgcagcgt
481 tacagacaaa caaacacaaa agctccttaa agtaccgaag ggaagtatag gacagtatat
541 tcaagatcgt tctgtggggc attcaaggat tccttctgca aaaggcaaga aaaatcagat
601 tggattaaaa attctagagc aacctcatgc agttctcttt gttgatgaaa aggatgttgt
661 agagataaat gaaaagttca cagagttact tttggcaatt accaattgtg aggagaggtt
721 cagcctgttt aaaaacagaa acagactaag taaaggcctc caaatagacg tgggctgtcc
781 tgtgaaagta cagctgagat ctggggaaga aaaatttcct ggagttgtac gcttcagagg
841 acccctgtta gcagagagga cagtctccgg aatattcttt ggagttgaat tgctggaaga
901 aggtcgtggt caaggtttca ctgacggggt gtaccaaggg aaacagcttt ttcagtgtga
961 tgaagattgt ggcgtgtttg ttgcattgga caagctagaa ctcatagaag atgatgacac
1021 tgcattggaa agtgattacg caggtcctgg ggacacaatg caggtcgaac ttcctccttt
1081 ggaaataaac tccagagttt ctttgaaggt tggagaaaca atagaatctg gaacagttat
1141 attctgtgat gttttgccag gaaaagaaag cttaggatat tttgttggtg tggacatgga
1201 taaccctatt ggcaactggg atggaagatt tgatggagtg cagctttgta gttttgcgtg
1261 tgttgaaagt acaattctat tgcacatcaa tgatatcatc ccagctttat cagagagtgt
1321 gacgcaggaa aggaggcctc ccaaacttgc ctttatgtca agaggtgttg gggacaaagg
1381 ttcatccagt cataataaac caaaggctac aggatctacc tcagaccctg gaaatagaaa
1441 cagatctgaa ttattttata ccttaaatgg gtcttctgtt gactcacaac cacaatccaa
1501 atcaaaaaat acatggtaca ttgatgaagt tgcagaagac cctgcaaaat ctcttacaga
1561 gatatctaca gactttgacc gttcttcacc accactccag cctcctcctg tgaactcact
1621 gaccaccgag aacagattcc actctttacc attcagtctc accaagatgc ccaataccaa
1681 tggaagtatt ggccacagtc cactttctct gtcagcccag tctgtaatgg aagagctaaa
1741 cactgcaccc gtccaagaga gtccaccctt ggccatgcct cctgggaact cacatggtct
1801 agaagtgggc tcattggctg aagttaagga gaaccctcct ttctatgggg taatccgttg
1861 gatcggtcag ccaccaggac tgaatgaagt gctcgctgga ctggaactgg aagatgagtg
1921 tgcaggctgt acggatggaa ccttcagagg cactcggtat ttcacctgtg ccctgaagaa
1981 ggcgctgttt gtgaaactga agagctgcag gcctgactct aggtttgcat cattgcagcc
2041 ggtttccaat cagattgagc gctgtaactc tttagcattt ggaggctact taagtgaagt
2101 agtagaagaa aatactccac caaaaatgga aaaagaaggc ttggagataa tgattgggaa
2161 gaagaaaggc atccagggtc attacaattc ttgttactta gactcaacct tattctgctt
2221 atttgctttt agttctgttc tggacactgt gttacttaga cccaaagaaa agaacgatgt
2281 agaatattat agtgaaaccc aagagctact gaggacagaa attgttaatc ctctgagaat
2341 atatggatat gtgtgtgcca caaaaattat gaaactgagg aaaatacttg aaaaggtgga
2401 ggctgcatca ggatttacct ctgaagaaaa agatcctgag gaattcttga atattctgtt
2461 tcatcatatt ttaagggtag aacctttgct aaaaataaga tcagcaggtc aaaaggtaca
2521 agattgttac ttctatcaaa tttttatgga aaaaaatgag aaagttggcg ttcccacaat
2581 tcagcagttg ttagaatggt cttttatcaa cagtaacctg aaatttgcag aggcaccatc
2641 atgtctgatt attcagatgc ctcgatttgg aaaagacttt aaactattta aaaaaatttt
2701 tccttctctg gaattaaata taacagattt acttgaagac actcccagac agtgccggat
2761 atgtggaggg cttgcaatgt atgagtgtag agaatgctac gacgatccgg acatctcagc
2821 tggaaaaatc aagcagtttt gtaaaacctg caacactcaa gtccaccttc atccgaagag
2881 gctgaatcat aaatataacc cagtgtcact tcccaaagac ttacccgact gggactggag
2941 acacggctgc atcccttgcc agaatatgga gttatttgct gttctctgca tagaaacaag
3001 ccactatgtt gcttttgtga agtatgggaa ggacgattct gcctggctct tctttgacag
3061 catggccgat cgggatggtg gtcagaatgg cttcaacatt cctcaagtca ccccatgccc
3121 agaagtagga gagtacttga agatgtctct ggaagacctg cattccttgg actccaggag
3181 aatccaaggc tgtgcacgaa gactgctttg tgatgcatat atgtgcatgt accagagtcc
3241 aacaatgagt ttgtacaaat aactggggtc atcgggaaag gcaaagaaac tgaaggcaga
3301 gtcctaacgt tgcatcttat tcgagctggc agttctgttc acgtccattg ccggcaatgg
3361 atgtctttgt ggtgatgatc cttcagaaaa ggatgcctct gtttaaaaac aaattgcttt
3421 tgtgtccctg aagtatttaa taagaagcat tttgcactct agaaagtatg tttgtgttgg
3481 ttttttaaga agtctaaatg aagttattaa tacctgaagc tttaagttaa gtgcattgat
3541 catatgatat ttttggaagc atacaatttt aattgtggaa gtttaaagcc tcttttagtc
3601 cattgagaat gtaaataaat gtgtcttctt tatggaccaa ggatatgaaa tcatttttct
3661 tttgtagcta acggttgcct tgaggaagaa ataatttggt tttattaaga gtctactctc
3721 aatccagtta ttagagatgt actgagtttg atttgttaat cctttctata tactgctgat
3781 cttgcatgtc tacaatctgc tcagtttttc tgtgtttctg caatagtggt cagaaaaata
3841 cttaaattcc cttaatggtg ttgttttcta tttgttctgg ttttgagata aatgagtgat
3901 tctgtcccca aatgtccatt tttgaagtga ttttcctgga ggattagggt atttagcagt
3961 tgaagctctt cattcatagt agttactgtc agctaacagg ttttttaagg cttttaacta
4021 ttaatatttt atggaatggg gcaaagtaaa ttgatgaaag aattggagtg ataatagtcc
4081 tttacaaaca tacagtccat aagaaaatga atttggcata tagaattatt acaatttcct
4141 gggagagatg gatatttaaa cctctattat tttagacaag actgtctaga acttaagttt
4201 gatctgtcag ccagtactcc cattaaattc agtgtagttt cacttgatag aatcagatat
4261 gttatcgaaa tgttagcagc agcttcatcc tccttctgat taaagtaagt agaaatggga
4321 tgttttgttt aataacagcc atagtgtgtg tttagaccac agcggatgtt gtagaccagg
4381 accatagatg atacatgtca gtgctgtgga atgtgcattc tctgagtgtt gttttgtggt
4441 atcattgtct ttcctgaatg actttctaac tgtgcagaaa ggcagaaaag tcatcatatg
4501 tatatgtcat atgactttat aaaatattta atgtgacaaa aagtggaaag aatctttaca
4561 aaccctgcaa ttactttttt aaaggcactt ttactctttg gttttatcat tccattttgc
4621 taatatttac tagctttata aattacagta aggtacaaaa actcatcttg taatattttc
4681 atttttgaag tgaaaaagta catatatttt gcacaaggtt ttatactgct aagtgcttgg
4741 ttggggtggt gagatgatga ttagatcagg ggtgaggctg agagactctg ggtttagggc
4801 tagccctgcc tccatctccc ttgggtaaaa tgaagggtgt ggggtaaaag atgcataagg
4861 ccttttctag ctctgacagc ctagaagtcc aatcaccctg taataaatat gtgttgaatg
4921 aagaaatggg tgaatgagct tgtcaatgtg attttaaaaa attgactacc tggaggaatg
4981 attaggaatc taaatgaagc cagccctcgg tatctgcagg tttctcatcc atggattcaa
5041 ccaactgcaa atggaaaata cgattttttt taaaaaaagg atggttacat ccgtattgaa
5101 catgtacaga cttttttctt gtcattattc tctgaacaat acaagaactc tttatgtagc
5161 atttacattt attaggtatt ataagtaatc tagagattat ttaattaaaa tatacaggag
5221 gatgtgtgtt tatatgccag aaattctgta ccattttgta tcagggaatt gagcatcttc
5281 agatgttggt atctgcaggg atcctggaac caaacccctg cagatactaa gggctgacga
5341 tctaggtaag actggattta acagttggaa a
//