LOCUS RID52123.1 1395 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2938
PROTEIN_ID RID52123.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02744"
/db_xref="Phytozome:Brara.H02744"
intron_pos 79:0 (1/31)
intron_pos 93:0 (2/31)
intron_pos 126:2 (3/31)
intron_pos 153:0 (4/31)
intron_pos 183:2 (5/31)
intron_pos 235:0 (6/31)
intron_pos 367:0 (7/31)
intron_pos 403:0 (8/31)
intron_pos 435:0 (9/31)
intron_pos 482:0 (10/31)
intron_pos 511:2 (11/31)
intron_pos 556:2 (12/31)
intron_pos 611:0 (13/31)
intron_pos 641:0 (14/31)
intron_pos 703:0 (15/31)
intron_pos 724:0 (16/31)
intron_pos 745:0 (17/31)
intron_pos 765:0 (18/31)
intron_pos 816:0 (19/31)
intron_pos 844:0 (20/31)
intron_pos 903:0 (21/31)
intron_pos 938:2 (22/31)
intron_pos 1010:0 (23/31)
intron_pos 1044:2 (24/31)
intron_pos 1089:0 (25/31)
intron_pos 1131:0 (26/31)
intron_pos 1168:0 (27/31)
intron_pos 1201:0 (28/31)
intron_pos 1259:0 (29/31)
intron_pos 1290:0 (30/31)
intron_pos 1328:2 (31/31)
BEGIN
1 MSNSLVHNLL NRALIRPPHH TKLNSSCLQP VGKISRSNLS TQLYGKGLHK SGRRLLTESG
61 RPVSFVTKAV LAMDPASQAV EKFNLDGNID LLVEVTSTNV REVNIQIAHT SDSLLLHWGA
121 IRDNKEKWVL PSRSPDRTIN YKSRALRTPF VKSGGNSYLK LEIDDHAIQA IEFLIFDESR
181 NKWYKNNGQN FHINLPMGSN VERNVSVPED LVQVQAYIRW ERNGKQNYSP EKEKEEYEAA
241 RTELREEMMR GASVEDLRRK LLKKDDSSDS PESKEASSSG QESEKRVSKQ PKQKKHFSSE
301 KIQRKGRDLD TLICKHVADV VESKSKSSSE PRALTTLEMY AKAKEEQEST PVFSKKTFKL
361 EGSMILVLVT KLSGKTKIHL ATDYKEKITL HWALSQKGGE WLDPPSDILP PNSLPVRGAV
421 DTQLTIASTD LPSPVQTFEV EIEGDSYKGM PFVLKAGERW IKNSGSDFYV DFAKEEKHVQ
481 KDYGDGKGTA KNLLDRIADL ESEAQKSFMH RFNIAADLVD EAKNAGQLGF AGILVWMRFM
541 ATRQLVWNKN YNVKPREISK AQDRLTDVLQ EVYASYPEYR ELLRMIMSTV GRGGEGDVGQ
601 RIRDEILVIQ RNNDCAGGMM EEWHQKLHNN TSPDDVVICQ ALMDYVKSDF DMSVYWKTLN
661 DNGITKERLL SYDRAIHSEP SFRREQKDGL LRDLGHYMRT LKAVHSGADL ESAIQNCMGY
721 QDDGEGFMVG VQINPVSGLP SGYPDLLRFV LQHVEEKNVE PLLEGLLEAR QELRPLLLKS
781 HDRLKDLLFL DLALDSTVRT AIERGYEQLN NAGPEKIMYF ISLVLENLAL SSDDNEDLIY
841 CLKGWQFALN MFKSKKDHWA LYAKSVLDRS RLALQSKAES YLEILQPSAE YLGSCLGVEQ
901 WAVSIFTEEI IRAGSAAALS SLVNRLDPVL RKTANLGSWQ VISPVEVVGY VIVVDELLTV
961 QNKTYDRPTI IVAKRVRGEE EIPDGAVAVL TPDMPDVLSH VSVRARNGKI CFATCFDSGI
1021 LSDLQAMDGK VLSLKPTSAD VVYREVNDSE VSSQSSDNLE DVPPSISLVK KQFVGRYAIS
1081 SEEFTNDLVG AKSRNIGYLK GKVPSWVGIP TSVALPFGVF EKVLSEKANQ AVSEKLQVLK
1141 KSLDEGNQGA LGEIRKTVLG LVAPAELVEE LKSTMKSSDM PWPGDEGEQR WEQAWSAIKK
1201 VWASKWNERA YFSTKKVKLD HDYLCMAVLV QEVINADYAF VIHTTNPSSG DSSEIYAEVV
1261 KGLGETLVGA YPGRSLSFIC KKNNLDTPLL LGYPSKPIGL FIRRSIIFRS DSNGEDLEGY
1321 AGAGLYDSVP MDEEDKVVLD YTTDPLITDE SFQQKILSDI ARAGDAIEKL YGTPQDIEGV
1381 IRDGKLYVVQ TRPQV
//