LOCUS BC080580 3095 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens pentatricopeptide repeat domain 1, mRNA (cDNA clone MGC:99605 IMAGE:6645909), complete cds. ACCESSION BC080580 VERSION BC080580.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3095) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3095) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 59 Row: o Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38492357. FEATURES Location/Qualifiers source 1..3095 /db_xref="H-InvDB:HIT000265848" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:99605 IMAGE:6645909" /tissue_type="Ovary, teratocarcinoma" /clone_lib="NIH_MGC_109" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3095 /gene="PTCD1" /gene_synonym="KIAA0632" /db_xref="GeneID:26024" /db_xref="HGNC:HGNC:22198" CDS 123..2225 /gene="PTCD1" /gene_synonym="KIAA0632" /codon_start=1 /product="pentatricopeptide repeat domain 1" /protein_id="AAH80580.1" /db_xref="GeneID:26024" /db_xref="HGNC:HGNC:22198" /translation="MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWA PFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLF RKSAAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFE RQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVC AESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHK GHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGL GDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEP SQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPP TVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAEFLLL ALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCH RPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVV IRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQ GDQDTGKEADDGCALGGR" BASE COUNT 726 a 918 c 935 g 516 t ORIGIN 1 gcgcgcttgg ggagaggggg acccgaggaa gagactggtt cgccgcgggg accgggcagg 61 gctccccgtc ggagtgcact gcgccggaca cttcaagccc tggagggaca ggaaagccag 121 aaatggactt cgtgagactc gctcgactgt tcgccagggc ccgccccatg ggactgttca 181 tcctgcaaca cctggacccc tgtagagcca ggtgggcagg aggcagggag gggctgatgc 241 ggccaatgtg ggcgcccttc agcagctcct cctctcagct gcccctcggc caggagcgtc 301 aggaaaacac gggcagcctg ggctctgacc cgagccactc caactccacg gccacgcagg 361 aagaagacga ggaggaggag gagagttttg ggaccctctc tgacaaatac tcctcccgga 421 gactattccg caaatccgca gcccagttcc ataacctgcg gtttggggaa cggagagatg 481 agcaaatgga accggagccc aaattatggc gaggccggag aaacaccccg tactggtact 541 tcttgcagtg caaacacctg atcaaggaag ggaagctggt tgaagccctg gacctgtttg 601 agaggcagat gctgaaggag gagcgattgc agcccatgga gagcaactac acggtgctga 661 ttgggggctg cgggcgggtt ggctacctga agaaggcctt caacctctac aaccagatga 721 aaaagcggga cctggagccc tcggacgcca cctacacggc cctgttcaac gtctgtgccg 781 agtccccctg gaaggactca gctctacaga gcgccctgaa gctccggcag cagctgcagg 841 ccaaaaactt cgagctcaac ttgaaaacat accacgcgct gctgaagatg gctgccaagt 901 gcgcagacct taggatgtgc ctcgatgtgt tcaaggaaat catccacaaa gggcacgtgg 961 tcacagagga gaccttcagt ttcctgctca tgggctgcat ccaagacaag aagacaggct 1021 tccggtacgc cctccaggtg tggcggctga tgctgagtct agggctacag ccgagccggg 1081 acagctacaa cctgctgttg gtggcagctc gggactgtgg cctaggggac ccccaggtgg 1141 cctcagagct gcttctgaag cccagggagg aggcgactgt gcttcagccc ccagtgagca 1201 ggcagcggcc aaggaggaca gcccaggcca aggcaggcaa cctcatgtca gccatgctgc 1261 atgtggaggc cctggagagg cagctgtttc tggaaccttc tcaggcactt gggcctccag 1321 agcctccgga agccagagtg cccggcaagg cccaaccaga ggtggatact aaggcagagc 1381 ccagccacac agcagccctc accgcagtgg ccctgaagcc acctcccgtg gagctggaag 1441 tcaacctcct gacccccggg gccgttcccc ctacagtggt ctcctttgga acggtgacca 1501 ccccagctga ccggctggcc ttgatagggg gcctggaggg cttcctgagc aagatggcag 1561 agcacaggca gcagcccgac atcaggaccc tcacgctact ggccgaggtg gtggagtccg 1621 ggagtcctgc agagttcttg ctgctggccc tcctggatga gcaccaggta gaggccgacc 1681 tgacattctt taacacgctg gtgagaaaga agagcaagct gggagacctg gagggggcca 1741 aggcgctgtt gccggtcctg gcaaagaggg gcctcgtccc caacctgcag acattctgca 1801 acctggccat cgggtgccac aggccgaagg acggtctaca gcttctcaca gacatgaaga 1861 agtcccaggt gacccccaac actcacatct acagtgccct catcaacgcg gccatcagga 1921 agctgaacta cacctatctc atcagcatct tgaaggacat gaagcagaac agggtcccgg 1981 tgaacgaagt ggtcatccgc cagctggagt ttgcagccca gtaccctccc acctttgacc 2041 ggtaccaagg gaagaacacc tacctggaga agattgacgg cttccgagcc tattacaagc 2101 agtggctgac agtgatgccc gcagaggaaa ccccgcaccc ctggcagaag ttccggacca 2161 agccccaggg ggaccaggac accggcaagg aggctgatga cggatgtgcc cttgggggca 2221 ggtgatggga gcacagctgg aacaatgtgc tcggccccca gtgctctgtg ggagccccag 2281 gacaagtgag ctggtgtcac ctcctgcctg ggggaagagc caggccctga ggaacagccg 2341 cagcgtgtca caggtgttgg tgaggacaca cactaggccc aaggtgcctg tgctcccagc 2401 aggtccaagt gcagctccag ccacctttgc gtgtcacctt cacgggactt ccagctccag 2461 ctacctttgt gtgtcacctc acacaccaca agggggctgg ggcatctggt ccctggggcc 2521 tgggccgccc cgccgggttc cataggccga tgctctgaaa gaagagacgt ggggctcgag 2581 agatttaaag attttatttt tacaaatcac agctgataga cagcgaagcc ttccccatag 2641 agaccgtgct ccaactcggg cctggggcac tgctcgctgc tcccaggaag ggggtggcgt 2701 gacaggcagg aacctgcgaa gtccagagtc cagggtggag cgcgccagcc tcagccagag 2761 cagccacgac agccacagtg tgtgcactcg atgatgcggc cctgcaacgg aggaggacag 2821 tgagacgatg ccactgcgcc acgctcgccc ctgcacactc acatatgtgg caaccctccc 2881 acgaaggacc tgccaccatg ccatataggg acacacctca gaaacccttc cttgacagct 2941 ctggacaggg aaaatttggc tccctcatga aggtagaacc agctgctgtt gacaccgagg 3001 ttacatctgt atgtctattt ataatatgtt ctgcaaatcc aacacacgtt tgccaatcaa 3061 gaaaaagaaa tcggtgtgaa aaaaaaaaaa aaaaa //