LOCUS BC080580 3095 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pentatricopeptide repeat domain 1, mRNA (cDNA clone
MGC:99605 IMAGE:6645909), complete cds.
ACCESSION BC080580
VERSION BC080580.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3095)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3095)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: o Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38492357.
FEATURES Location/Qualifiers
source 1..3095
/db_xref="H-InvDB:HIT000265848"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99605 IMAGE:6645909"
/tissue_type="Ovary, teratocarcinoma"
/clone_lib="NIH_MGC_109"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3095
/gene="PTCD1"
/gene_synonym="KIAA0632"
/db_xref="GeneID:26024"
/db_xref="HGNC:HGNC:22198"
CDS 123..2225
/gene="PTCD1"
/gene_synonym="KIAA0632"
/codon_start=1
/product="pentatricopeptide repeat domain 1"
/protein_id="AAH80580.1"
/db_xref="GeneID:26024"
/db_xref="HGNC:HGNC:22198"
/translation="MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWA
PFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLF
RKSAAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFE
RQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVC
AESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHK
GHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGL
GDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEP
SQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPP
TVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAEFLLL
ALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCH
RPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVV
IRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQ
GDQDTGKEADDGCALGGR"
BASE COUNT 726 a 918 c 935 g 516 t
ORIGIN
1 gcgcgcttgg ggagaggggg acccgaggaa gagactggtt cgccgcgggg accgggcagg
61 gctccccgtc ggagtgcact gcgccggaca cttcaagccc tggagggaca ggaaagccag
121 aaatggactt cgtgagactc gctcgactgt tcgccagggc ccgccccatg ggactgttca
181 tcctgcaaca cctggacccc tgtagagcca ggtgggcagg aggcagggag gggctgatgc
241 ggccaatgtg ggcgcccttc agcagctcct cctctcagct gcccctcggc caggagcgtc
301 aggaaaacac gggcagcctg ggctctgacc cgagccactc caactccacg gccacgcagg
361 aagaagacga ggaggaggag gagagttttg ggaccctctc tgacaaatac tcctcccgga
421 gactattccg caaatccgca gcccagttcc ataacctgcg gtttggggaa cggagagatg
481 agcaaatgga accggagccc aaattatggc gaggccggag aaacaccccg tactggtact
541 tcttgcagtg caaacacctg atcaaggaag ggaagctggt tgaagccctg gacctgtttg
601 agaggcagat gctgaaggag gagcgattgc agcccatgga gagcaactac acggtgctga
661 ttgggggctg cgggcgggtt ggctacctga agaaggcctt caacctctac aaccagatga
721 aaaagcggga cctggagccc tcggacgcca cctacacggc cctgttcaac gtctgtgccg
781 agtccccctg gaaggactca gctctacaga gcgccctgaa gctccggcag cagctgcagg
841 ccaaaaactt cgagctcaac ttgaaaacat accacgcgct gctgaagatg gctgccaagt
901 gcgcagacct taggatgtgc ctcgatgtgt tcaaggaaat catccacaaa gggcacgtgg
961 tcacagagga gaccttcagt ttcctgctca tgggctgcat ccaagacaag aagacaggct
1021 tccggtacgc cctccaggtg tggcggctga tgctgagtct agggctacag ccgagccggg
1081 acagctacaa cctgctgttg gtggcagctc gggactgtgg cctaggggac ccccaggtgg
1141 cctcagagct gcttctgaag cccagggagg aggcgactgt gcttcagccc ccagtgagca
1201 ggcagcggcc aaggaggaca gcccaggcca aggcaggcaa cctcatgtca gccatgctgc
1261 atgtggaggc cctggagagg cagctgtttc tggaaccttc tcaggcactt gggcctccag
1321 agcctccgga agccagagtg cccggcaagg cccaaccaga ggtggatact aaggcagagc
1381 ccagccacac agcagccctc accgcagtgg ccctgaagcc acctcccgtg gagctggaag
1441 tcaacctcct gacccccggg gccgttcccc ctacagtggt ctcctttgga acggtgacca
1501 ccccagctga ccggctggcc ttgatagggg gcctggaggg cttcctgagc aagatggcag
1561 agcacaggca gcagcccgac atcaggaccc tcacgctact ggccgaggtg gtggagtccg
1621 ggagtcctgc agagttcttg ctgctggccc tcctggatga gcaccaggta gaggccgacc
1681 tgacattctt taacacgctg gtgagaaaga agagcaagct gggagacctg gagggggcca
1741 aggcgctgtt gccggtcctg gcaaagaggg gcctcgtccc caacctgcag acattctgca
1801 acctggccat cgggtgccac aggccgaagg acggtctaca gcttctcaca gacatgaaga
1861 agtcccaggt gacccccaac actcacatct acagtgccct catcaacgcg gccatcagga
1921 agctgaacta cacctatctc atcagcatct tgaaggacat gaagcagaac agggtcccgg
1981 tgaacgaagt ggtcatccgc cagctggagt ttgcagccca gtaccctccc acctttgacc
2041 ggtaccaagg gaagaacacc tacctggaga agattgacgg cttccgagcc tattacaagc
2101 agtggctgac agtgatgccc gcagaggaaa ccccgcaccc ctggcagaag ttccggacca
2161 agccccaggg ggaccaggac accggcaagg aggctgatga cggatgtgcc cttgggggca
2221 ggtgatggga gcacagctgg aacaatgtgc tcggccccca gtgctctgtg ggagccccag
2281 gacaagtgag ctggtgtcac ctcctgcctg ggggaagagc caggccctga ggaacagccg
2341 cagcgtgtca caggtgttgg tgaggacaca cactaggccc aaggtgcctg tgctcccagc
2401 aggtccaagt gcagctccag ccacctttgc gtgtcacctt cacgggactt ccagctccag
2461 ctacctttgt gtgtcacctc acacaccaca agggggctgg ggcatctggt ccctggggcc
2521 tgggccgccc cgccgggttc cataggccga tgctctgaaa gaagagacgt ggggctcgag
2581 agatttaaag attttatttt tacaaatcac agctgataga cagcgaagcc ttccccatag
2641 agaccgtgct ccaactcggg cctggggcac tgctcgctgc tcccaggaag ggggtggcgt
2701 gacaggcagg aacctgcgaa gtccagagtc cagggtggag cgcgccagcc tcagccagag
2761 cagccacgac agccacagtg tgtgcactcg atgatgcggc cctgcaacgg aggaggacag
2821 tgagacgatg ccactgcgcc acgctcgccc ctgcacactc acatatgtgg caaccctccc
2881 acgaaggacc tgccaccatg ccatataggg acacacctca gaaacccttc cttgacagct
2941 ctggacaggg aaaatttggc tccctcatga aggtagaacc agctgctgtt gacaccgagg
3001 ttacatctgt atgtctattt ataatatgtt ctgcaaatcc aacacacgtt tgccaatcaa
3061 gaaaaagaaa tcggtgtgaa aaaaaaaaaa aaaaa
//