LOCUS BC073853 1347 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens alkaline ceramidase 3, mRNA (cDNA clone MGC:90228 IMAGE:3867010), complete cds. ACCESSION BC073853 VERSION BC073853.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1347) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1347) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 166 Row: a Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31543398. FEATURES Location/Qualifiers source 1..1347 /db_xref="H-InvDB:HIT000265078" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:90228 IMAGE:3867010" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1347 /gene="ACER3" /gene_synonym="APHC" /db_xref="GeneID:55331" /db_xref="HGNC:HGNC:16066" CDS 22..825 /gene="ACER3" /gene_synonym="APHC" /codon_start=1 /product="alkaline ceramidase 3" /protein_id="AAH73853.1" /db_xref="GeneID:55331" /db_xref="HGNC:HGNC:16066" /translation="MAPAADREGYWGPTTSTLDWCEENYSVTWYIAEFWNTVSNLIMI IPPMFGAIQSVRDGLEKRYIASYLALTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCI FVYCMFECFKIKNSVNYHLLFTLVLFSLIVTTVYLKVKEPIFHQVMYGMLVFTLVLRS IYIVTWVYPWLRGLGYTSLGIFLLGFLFWNIDNIFCESLRNFRKKVPPIIGITTQFHA WWHILTGLGSYLHILFSLYTRTLYLRYRPKVKFLFGIWPVILFEPLRKH" BASE COUNT 387 a 266 c 284 g 410 t ORIGIN 1 ggcggcggcg gcggcggcgt gatggctccg gccgcggacc gagagggcta ctggggcccc 61 acgacctcca cgctggactg gtgcgaggag aactactccg tgacctggta catcgccgag 121 ttctggaata cagtgagtaa cctgatcatg attatacctc caatgttcgg tgcaattcag 181 agtgttagag acggtctgga aaaacggtac attgcttctt atttagcact cacagtggta 241 ggaatgggat cctggtgctt ccacatgact ctgaaatatg aaatgcagct attggatgaa 301 ctcccaatga tatacagctg ttgcatattt gtgtactgca tgtttgaatg tttcaagatc 361 aagaactcag taaactacca tctgcttttt accttagttc tattcagttt aatagtaacc 421 acagtttacc ttaaggtaaa agagccaata ttccatcagg tcatgtatgg aatgttggtc 481 tttacattag tacttcgatc tatttatatt gttacatggg tttatccatg gcttagagga 541 ctgggttata catcattggg tatattttta ttgggatttt tattttggaa tatagataac 601 atattttgtg agtcactgag gaactttcga aagaaggtac cacctatcat aggtattacc 661 acacaatttc atgcatggtg gcatatttta actggccttg gttcctatct tcacatcctt 721 ttcagtttgt atacaagaac actttacctg agatataggc caaaagtgaa gtttctcttt 781 ggaatctggc cagtgatcct gtttgagcct ctcaggaagc attgatgaat cattccacca 841 agaaaacaaa caagcaccta ccatagacct ggcagaataa ataaggaaat ccttaaagat 901 ctacaagttc aaatatgtca tgaccatcac agcagaggag tgactttctg actaatgctg 961 ccacccacac agagaataag gagtagggcc tgctgggtgt ttagctcatg gctttatctt 1021 atttgtcccc ctcctccttt cacgctccag tttataaaga aacagagatg atgtgtgtgt 1081 atgcctcaaa tgcagaaaca gttgggcttt tcttaacagg ttaacagttt gtgctggtta 1141 taagaaatta accttctttt ctttttgcca agggttgcat gtgaattata cctttcttaa 1201 tatttgatta aataatgcag tcagctaaga gccaacaaaa ccccatatcc agatagttag 1261 ctgtgagcca gcactcagct gtgtcagatt tgattaatat tgtattaatc tcatggatgg 1321 ttctcaaagg taaaaaaaaa aaaaaaa //