LOCUS BC073853 1347 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens alkaline ceramidase 3, mRNA (cDNA clone MGC:90228
IMAGE:3867010), complete cds.
ACCESSION BC073853
VERSION BC073853.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1347)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1347)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: a Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543398.
FEATURES Location/Qualifiers
source 1..1347
/db_xref="H-InvDB:HIT000265078"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:90228 IMAGE:3867010"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1347
/gene="ACER3"
/gene_synonym="APHC"
/db_xref="GeneID:55331"
/db_xref="HGNC:HGNC:16066"
CDS 22..825
/gene="ACER3"
/gene_synonym="APHC"
/codon_start=1
/product="alkaline ceramidase 3"
/protein_id="AAH73853.1"
/db_xref="GeneID:55331"
/db_xref="HGNC:HGNC:16066"
/translation="MAPAADREGYWGPTTSTLDWCEENYSVTWYIAEFWNTVSNLIMI
IPPMFGAIQSVRDGLEKRYIASYLALTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCI
FVYCMFECFKIKNSVNYHLLFTLVLFSLIVTTVYLKVKEPIFHQVMYGMLVFTLVLRS
IYIVTWVYPWLRGLGYTSLGIFLLGFLFWNIDNIFCESLRNFRKKVPPIIGITTQFHA
WWHILTGLGSYLHILFSLYTRTLYLRYRPKVKFLFGIWPVILFEPLRKH"
BASE COUNT 387 a 266 c 284 g 410 t
ORIGIN
1 ggcggcggcg gcggcggcgt gatggctccg gccgcggacc gagagggcta ctggggcccc
61 acgacctcca cgctggactg gtgcgaggag aactactccg tgacctggta catcgccgag
121 ttctggaata cagtgagtaa cctgatcatg attatacctc caatgttcgg tgcaattcag
181 agtgttagag acggtctgga aaaacggtac attgcttctt atttagcact cacagtggta
241 ggaatgggat cctggtgctt ccacatgact ctgaaatatg aaatgcagct attggatgaa
301 ctcccaatga tatacagctg ttgcatattt gtgtactgca tgtttgaatg tttcaagatc
361 aagaactcag taaactacca tctgcttttt accttagttc tattcagttt aatagtaacc
421 acagtttacc ttaaggtaaa agagccaata ttccatcagg tcatgtatgg aatgttggtc
481 tttacattag tacttcgatc tatttatatt gttacatggg tttatccatg gcttagagga
541 ctgggttata catcattggg tatattttta ttgggatttt tattttggaa tatagataac
601 atattttgtg agtcactgag gaactttcga aagaaggtac cacctatcat aggtattacc
661 acacaatttc atgcatggtg gcatatttta actggccttg gttcctatct tcacatcctt
721 ttcagtttgt atacaagaac actttacctg agatataggc caaaagtgaa gtttctcttt
781 ggaatctggc cagtgatcct gtttgagcct ctcaggaagc attgatgaat cattccacca
841 agaaaacaaa caagcaccta ccatagacct ggcagaataa ataaggaaat ccttaaagat
901 ctacaagttc aaatatgtca tgaccatcac agcagaggag tgactttctg actaatgctg
961 ccacccacac agagaataag gagtagggcc tgctgggtgt ttagctcatg gctttatctt
1021 atttgtcccc ctcctccttt cacgctccag tttataaaga aacagagatg atgtgtgtgt
1081 atgcctcaaa tgcagaaaca gttgggcttt tcttaacagg ttaacagttt gtgctggtta
1141 taagaaatta accttctttt ctttttgcca agggttgcat gtgaattata cctttcttaa
1201 tatttgatta aataatgcag tcagctaaga gccaacaaaa ccccatatcc agatagttag
1261 ctgtgagcca gcactcagct gtgtcagatt tgattaatat tgtattaatc tcatggatgg
1321 ttctcaaagg taaaaaaaaa aaaaaaa
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