LOCUS BC072383 3216 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone MGC:71151 IMAGE:6371187), complete cds. ACCESSION BC072383 VERSION BC072383.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3216) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3216) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 50 Row: m Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48928051. FEATURES Location/Qualifiers source 1..3216 /db_xref="H-InvDB:HIT000264828" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71151 IMAGE:6371187" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_18" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3216 /gene="NPAS2" /gene_synonym="FLJ23138" /gene_synonym="MGC71151" /gene_synonym="MOP4" /gene_synonym="PASD4" /db_xref="GeneID:4862" /db_xref="HGNC:HGNC:7895" /db_xref="MIM:603347" CDS 254..2728 /gene="NPAS2" /gene_synonym="FLJ23138" /gene_synonym="MGC71151" /gene_synonym="MOP4" /gene_synonym="PASD4" /codon_start=1 /product="neuronal PAS domain protein 2" /protein_id="AAH72383.1" /db_xref="GeneID:4862" /db_xref="HGNC:HGNC:7895" /db_xref="MIM:603347" /translation="MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMD KTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTT DGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYL KSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRV PLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLP FEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITY HQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHF NALDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQ ELPVPGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQFSAQFSMFQTIKDQ LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ LQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRESSVISTQGPKPMRSSQLMQSSG RSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQCQPSPDFSHDRQLRLLLSQPIQP MMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPS FPASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLLLSTYSQQPGTLGYPQPPP AQPQPLRPPRRVSSLSESSGLQQPPR" BASE COUNT 768 a 1014 c 808 g 626 t ORIGIN 1 gccgagggac ccgcgcggct gcggcccagg agcggcggcc gcggagcccg gagacccgca 61 gccgcggcgg cggcggcggc ggcggcagca gctagagcag cgcctcccgc cgccgcccgg 121 gaggagctcg ccgcgcccgc tcgccgcctc gtctcccagc ggcggcggga ggcgcgtctc 181 cccggcccag tccgcgcccg gccccgcggg gccgctccgg cccgctccga ggaaaaactg 241 catagaaaat ctaatggatg aagatgagaa agacagagcc aagagagctt ctcgaaacaa 301 gtctgagaag aagcgtcggg accagttcaa tgttctcatc aaagagctca gttccatgct 361 ccctggcaac acgcggaaaa tggacaaaac caccgtgttg gaaaaggtca tcggattttt 421 gcagaaacac aatgaagtct cagcgcaaac ggaaatctgt gacattcagc aagactggaa 481 gccttcattc ctcagtaatg aagaattcac ccagctgatg ttggaggcat tagatggctt 541 cattatcgca gtgacaacag acggcagcat catctatgtc tctgacagta tcacgcctct 601 ccttgggcat ttaccgtcgg atgtcatgga tcagaatttg ttaaatttcc tcccagaaca 661 agaacattca gaagtttata aaatcctttc ttcccatatg cttgtgacgg attccccctc 721 cccagaatac ttaaaatctg acagcgattt agagttttat tgccatcttc tcagaggcag 781 cttgaaccca aaggaatttc caacttatga atacataaaa tttgtaggaa attttcgctc 841 ttacaacaat gtgcctagcc cctcctgtaa tggttttgac aacacccttt caagaccttg 901 ccgggtgcca ctaggaaagg aggtttgctt cattgccacc gttcgtctgg caacaccaca 961 attcttaaag gaaatgtgca tagttgacga acctttagag gaattcactt caaggcatag 1021 cttggaatgg aaatttttat ttctggatca cagagcacct ccaatcatag gatacctgcc 1081 ttttgaagtg ctgggaacct caggctatga ctactaccac attgatgacc tggagctcct 1141 ggccaggtgt caccagcacc tgatgcagtt tggcaaaggg aagtcgtgtt gctaccggtt 1201 tctgaccaaa ggtcagcagt ggatctggct gcagactcac tactacatca cctaccatca 1261 gtggaactcc aagcccgagt tcatcgtgtg cacacactcg gtggtcagtt acgcagatgt 1321 ccgggtggaa aggaggcagg agctggctct ggaagacccg ccatccgagg ccctccactc 1381 ctcagcacta aaggacaagg gctcaagcct ggaacctcgg cagcacttta acgcactcga 1441 cgtgggtgcc tcgggcctta ataccagtca ttcgccatcg gcgtcctcaa gaagttccca 1501 caaatcctcg cacacagcca tgtcagaacc cacctccact cccaccaagc tgatggcaga 1561 ggccagcacc ccggctttgc caagatcagc caccctgccc caagagttac ctgtccccgg 1621 gctcagccag gcagccacca tgccggcccc tctgccttcc ccatcgtcct gcgacctcac 1681 acagcagctc ctgcctcaga ccgttctgca gagcacgccc gctcccatgg cacagttttc 1741 ggcacagttc agcatgttcc agaccatcaa agaccagcta gagcagcgga cgcggatcct 1801 gcaggccaat atccggtggc aacaggaaga gctccacaag atccaggagc agctctgcct 1861 ggtccaggac tccaacgtcc agatgttcct gcagcagcca gctgtatccc tgagcttcag 1921 cagcacccag cgacctgagg ctcagcagca gctacagcaa aggtcagctg cagtgactca 1981 gccccagctc ggggcgggcc cccaacttcc agggcagatc tcctctgccc aggtcacaag 2041 ccagcacctg ctcagagaat caagtgtgat atcaacccag ggtccaaagc caatgagaag 2101 ctcacagcta atgcagagca gcggccgctc tggaagcagc ctagtgtccc cgttcagcag 2161 cgccacagct gcgctcccgc caagtctgaa tctgaccaca cctgcttcca cctcccagga 2221 tgccagccag tgccagccca gcccagactt cagccatgat cggcagctca ggctgttgct 2281 gagccagccc atccagccca tgatgcccgg gtcctgtgac gcaaggcagc cctcggaagt 2341 cagcaggacg ggacggcaag tcaagtacgc ccagagccag actgtgtttc aaaatccaga 2401 cgcacacccc gccaacagca gcagcgcccc gatgcccgtc ctgctgatgg ggcaggcggt 2461 gctccacccc agcttccctg cctcccaacc atcgcccctg cagcctgcac aggcccggca 2521 gcagccaccg cagcactacc tgcaggtaca ggcaccaacc tctttgcaca gtgagcagca 2581 ggactcgcta cttctctcca cctactcaca acagccaggg accctgggct acccccaacc 2641 acccccagca cagccccagc ccctacgtcc tccccgaagg gtcagcagtc tgtctgagtc 2701 gtcaggcctc cagcagccgc cccgataatg ccccggcact gaagtcggga cacaatcagc 2761 tttaaccaat ggatgagggg ggtggccaca ggagatgggg agaggagtct gaactaaacc 2821 cctggctttt gtgcacactg catacgtttc agaactcctg gatggtaacc atctctggag 2881 tgcagcgctt gctgcagtgg aaatgatcag gaatactgac cgtgtttctc ttgcctccga 2941 ggttcttggg cacactctat agccatactg gacaggaacc aggtgccccg tgtaggcatc 3001 gtcggtcggt ttgccgtcag agatggcgca tctcgctgca tcccccgaga gtacaccggt 3061 tgctctagcc acctgcggcc cgcccatctg cgctagctgg ccttcacgct cttgatcgtc 3121 tttcctttgt attggagaag gactgggtca gagatctgtt ggagagagag aataaagaga 3181 ttatttttca ttatttttaa aaaaaaaaaa aaaaaa //