LOCUS BC072383 3216 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone
MGC:71151 IMAGE:6371187), complete cds.
ACCESSION BC072383
VERSION BC072383.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3216)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3216)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: m Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48928051.
FEATURES Location/Qualifiers
source 1..3216
/db_xref="H-InvDB:HIT000264828"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71151 IMAGE:6371187"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3216
/gene="NPAS2"
/gene_synonym="FLJ23138"
/gene_synonym="MGC71151"
/gene_synonym="MOP4"
/gene_synonym="PASD4"
/db_xref="GeneID:4862"
/db_xref="HGNC:HGNC:7895"
/db_xref="MIM:603347"
CDS 254..2728
/gene="NPAS2"
/gene_synonym="FLJ23138"
/gene_synonym="MGC71151"
/gene_synonym="MOP4"
/gene_synonym="PASD4"
/codon_start=1
/product="neuronal PAS domain protein 2"
/protein_id="AAH72383.1"
/db_xref="GeneID:4862"
/db_xref="HGNC:HGNC:7895"
/db_xref="MIM:603347"
/translation="MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMD
KTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTT
DGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYL
KSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRV
PLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLP
FEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITY
HQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHF
NALDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQ
ELPVPGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQFSAQFSMFQTIKDQ
LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ
LQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRESSVISTQGPKPMRSSQLMQSSG
RSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQCQPSPDFSHDRQLRLLLSQPIQP
MMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPS
FPASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLLLSTYSQQPGTLGYPQPPP
AQPQPLRPPRRVSSLSESSGLQQPPR"
BASE COUNT 768 a 1014 c 808 g 626 t
ORIGIN
1 gccgagggac ccgcgcggct gcggcccagg agcggcggcc gcggagcccg gagacccgca
61 gccgcggcgg cggcggcggc ggcggcagca gctagagcag cgcctcccgc cgccgcccgg
121 gaggagctcg ccgcgcccgc tcgccgcctc gtctcccagc ggcggcggga ggcgcgtctc
181 cccggcccag tccgcgcccg gccccgcggg gccgctccgg cccgctccga ggaaaaactg
241 catagaaaat ctaatggatg aagatgagaa agacagagcc aagagagctt ctcgaaacaa
301 gtctgagaag aagcgtcggg accagttcaa tgttctcatc aaagagctca gttccatgct
361 ccctggcaac acgcggaaaa tggacaaaac caccgtgttg gaaaaggtca tcggattttt
421 gcagaaacac aatgaagtct cagcgcaaac ggaaatctgt gacattcagc aagactggaa
481 gccttcattc ctcagtaatg aagaattcac ccagctgatg ttggaggcat tagatggctt
541 cattatcgca gtgacaacag acggcagcat catctatgtc tctgacagta tcacgcctct
601 ccttgggcat ttaccgtcgg atgtcatgga tcagaatttg ttaaatttcc tcccagaaca
661 agaacattca gaagtttata aaatcctttc ttcccatatg cttgtgacgg attccccctc
721 cccagaatac ttaaaatctg acagcgattt agagttttat tgccatcttc tcagaggcag
781 cttgaaccca aaggaatttc caacttatga atacataaaa tttgtaggaa attttcgctc
841 ttacaacaat gtgcctagcc cctcctgtaa tggttttgac aacacccttt caagaccttg
901 ccgggtgcca ctaggaaagg aggtttgctt cattgccacc gttcgtctgg caacaccaca
961 attcttaaag gaaatgtgca tagttgacga acctttagag gaattcactt caaggcatag
1021 cttggaatgg aaatttttat ttctggatca cagagcacct ccaatcatag gatacctgcc
1081 ttttgaagtg ctgggaacct caggctatga ctactaccac attgatgacc tggagctcct
1141 ggccaggtgt caccagcacc tgatgcagtt tggcaaaggg aagtcgtgtt gctaccggtt
1201 tctgaccaaa ggtcagcagt ggatctggct gcagactcac tactacatca cctaccatca
1261 gtggaactcc aagcccgagt tcatcgtgtg cacacactcg gtggtcagtt acgcagatgt
1321 ccgggtggaa aggaggcagg agctggctct ggaagacccg ccatccgagg ccctccactc
1381 ctcagcacta aaggacaagg gctcaagcct ggaacctcgg cagcacttta acgcactcga
1441 cgtgggtgcc tcgggcctta ataccagtca ttcgccatcg gcgtcctcaa gaagttccca
1501 caaatcctcg cacacagcca tgtcagaacc cacctccact cccaccaagc tgatggcaga
1561 ggccagcacc ccggctttgc caagatcagc caccctgccc caagagttac ctgtccccgg
1621 gctcagccag gcagccacca tgccggcccc tctgccttcc ccatcgtcct gcgacctcac
1681 acagcagctc ctgcctcaga ccgttctgca gagcacgccc gctcccatgg cacagttttc
1741 ggcacagttc agcatgttcc agaccatcaa agaccagcta gagcagcgga cgcggatcct
1801 gcaggccaat atccggtggc aacaggaaga gctccacaag atccaggagc agctctgcct
1861 ggtccaggac tccaacgtcc agatgttcct gcagcagcca gctgtatccc tgagcttcag
1921 cagcacccag cgacctgagg ctcagcagca gctacagcaa aggtcagctg cagtgactca
1981 gccccagctc ggggcgggcc cccaacttcc agggcagatc tcctctgccc aggtcacaag
2041 ccagcacctg ctcagagaat caagtgtgat atcaacccag ggtccaaagc caatgagaag
2101 ctcacagcta atgcagagca gcggccgctc tggaagcagc ctagtgtccc cgttcagcag
2161 cgccacagct gcgctcccgc caagtctgaa tctgaccaca cctgcttcca cctcccagga
2221 tgccagccag tgccagccca gcccagactt cagccatgat cggcagctca ggctgttgct
2281 gagccagccc atccagccca tgatgcccgg gtcctgtgac gcaaggcagc cctcggaagt
2341 cagcaggacg ggacggcaag tcaagtacgc ccagagccag actgtgtttc aaaatccaga
2401 cgcacacccc gccaacagca gcagcgcccc gatgcccgtc ctgctgatgg ggcaggcggt
2461 gctccacccc agcttccctg cctcccaacc atcgcccctg cagcctgcac aggcccggca
2521 gcagccaccg cagcactacc tgcaggtaca ggcaccaacc tctttgcaca gtgagcagca
2581 ggactcgcta cttctctcca cctactcaca acagccaggg accctgggct acccccaacc
2641 acccccagca cagccccagc ccctacgtcc tccccgaagg gtcagcagtc tgtctgagtc
2701 gtcaggcctc cagcagccgc cccgataatg ccccggcact gaagtcggga cacaatcagc
2761 tttaaccaat ggatgagggg ggtggccaca ggagatgggg agaggagtct gaactaaacc
2821 cctggctttt gtgcacactg catacgtttc agaactcctg gatggtaacc atctctggag
2881 tgcagcgctt gctgcagtgg aaatgatcag gaatactgac cgtgtttctc ttgcctccga
2941 ggttcttggg cacactctat agccatactg gacaggaacc aggtgccccg tgtaggcatc
3001 gtcggtcggt ttgccgtcag agatggcgca tctcgctgca tcccccgaga gtacaccggt
3061 tgctctagcc acctgcggcc cgcccatctg cgctagctgg ccttcacgct cttgatcgtc
3121 tttcctttgt attggagaag gactgggtca gagatctgtt ggagagagag aataaagaga
3181 ttatttttca ttatttttaa aaaaaaaaaa aaaaaa
//