LOCUS BC071165 2141 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1, mRNA (cDNA clone MGC:90282 IMAGE:5756382), complete cds. ACCESSION BC071165 VERSION BC071165.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2141) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2141) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-MAY-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 174 Row: c Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254427 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..2141 /db_xref="H-InvDB:HIT000264375" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:90282 IMAGE:5756382" /tissue_type="Blood, adult leukocytes" /clone_lib="NIH_MGC_118" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2141 /gene="SLC11A1" /db_xref="GeneID:6556" /db_xref="HGNC:HGNC:10907" /db_xref="MIM:600266" CDS 489..1787 /gene="SLC11A1" /codon_start=1 /product="SLC11A1 protein" /protein_id="AAH71165.1" /db_xref="GeneID:6556" /db_xref="HGNC:HGNC:10907" /db_xref="MIM:600266" /translation="MVRCQLTATSTSQVPRTVLWLTIELAIVGSDMQEVIGTAIAFNL LSAGRIPLWGGVLITIVDTFFFLFLDNYGLRKLEAFFGLLITIMALTFGYEYVVARPE QGALLRGLFLPSCPGCGHPELLQAVGIVGAIIMPHNIYLHSALVKSREIDRARRADIR EANMYFLIEATIALSVSFIINLFVMAVFGQAFYQKTNQAAFNICANSSLHDYAKIFPM NNATVAVDIYQGGVILGCLFGPAALYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLRLR WSRFARVLLTRSCAILPTVLVAVFRDLRDLSGLNDLLNVLQSLLLPFAVLPILTFTSM PTLMQEFANGLLNKVVTSSIMVLVCAINLYFVVSYLPSLPHPAYFGLAALLAAAYLGL STYLVWTCCLAHGATFLAHSSHHHFLYGLLEEDQKGETSG" BASE COUNT 457 a 679 c 560 g 445 t ORIGIN 1 ggctgaggag ctgcccagag caccgctcac actcccagag tacctgaagt cggcatttca 61 atgacaggtg acaagggtcc ccaaaggcta agcgggtcca gctatggttc catctccagc 121 ccgaccagcc cgaccagccc agggccacag caagcacctc ccagagagac ctacctgagt 181 gagaagatcc ccatcccaga cacaaaaccg ggcaccttca gcctgcggaa gctatgggcc 241 ttcacggggc ctggctttct catgagcatt gctttcctgg acccaggaaa catcgagtca 301 gatcttcagg ctggcgccgt ggcgggattc aaacttctct gggtgctgct ctgggccacc 361 gtgttgggct tgctctgcca gcgactggct gcacgtctgg gcgtggtgac aggcaaggac 421 ttgggcgagg tctgccatct ctactaccct aagtcggagt ctcgctccgt cgcccagtca 481 ggagtgcaat ggtgcgatgt cagctcactg caacctctac ctcccaggtg ccccgcaccg 541 tcctctggct gaccatcgag ctagccattg tgggctccga catgcaggaa gtcatcggca 601 cggccattgc attcaatctg ctctcagctg gacgaatccc actctggggt ggcgtcctca 661 tcaccatcgt ggacaccttc ttcttcctct tcctcgataa ctacgggctg cggaagctgg 721 aagctttttt tggactcctt ataaccatta tggccttgac ctttggctat gagtatgtgg 781 tggcgcgtcc tgagcaggga gcgcttcttc ggggcctgtt cctgccctcg tgcccgggct 841 gcggccaccc cgagctgctg caggcggtgg gcattgttgg cgccatcatc atgccccaca 901 acatctacct gcactcggcc ctggtcaagt ctcgagagat agaccgggcc cgccgagcgg 961 acatcagaga agccaacatg tacttcctga ttgaggccac catcgccctg tccgtctcct 1021 ttatcatcaa cctctttgtc atggctgtct ttgggcaggc cttctaccag aaaaccaacc 1081 aggctgcgtt caacatctgt gccaacagca gcctccacga ctacgccaag atcttcccca 1141 tgaacaacgc caccgtggcc gtggacattt accagggggg cgtgatcctg ggctgcctgt 1201 tcggccccgc ggccctctac atctgggcca taggtctcct ggcggctggg cagagctcca 1261 ccatgacggg cacctacgcg ggacagttcg tgatggaggg cttcctgagg ctgcggtggt 1321 cacgcttcgc ccgtgtcctc ctcacccgct cctgcgccat cctgcccacc gtgctcgtgg 1381 ctgtcttccg ggacctgagg gacttgtcgg gcctcaatga tctgctcaac gtgctgcaga 1441 gcctgctgct cccgttcgcc gtgctgccca tcctcacgtt caccagcatg cccaccctca 1501 tgcaggagtt tgccaatggc ctgctgaaca aggtcgtcac ctcttccatc atggtgctag 1561 tctgcgccat caacctctac ttcgtggtca gctatctgcc cagcctgccc caccctgcct 1621 acttcggcct tgcagccttg ctggccgcag cctacctggg cctcagcacc tacctggtct 1681 ggacctgttg ccttgcccac ggagccacct ttctggccca cagctcccac caccacttcc 1741 tgtatgggct ccttgaagag gaccagaaag gggagacctc tggctaggcc cacaccaggg 1801 cctggctggg agtggcatgt atgacgtgac tggcctgctg gatgtggagg gggcgcgtgc 1861 aggcagcagg atggagtggg acagttcctg agaccagcca acctgggggc tttagggacc 1921 tgctgtttcc tagcgcagcc atgtgattac cctctgggtc tcagtgtcct catctgtaaa 1981 atggagacac caccaccctt gccatggagg ttaagcactt taacacagtg tctggcactt 2041 gggacaaaaa caaacaaaca aacaaaaaac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //