LOCUS BC071165 2141 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens solute carrier family 11 (proton-coupled divalent
metal ion transporters), member 1, mRNA (cDNA clone MGC:90282
IMAGE:5756382), complete cds.
ACCESSION BC071165
VERSION BC071165.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2141)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2141)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254427
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2141
/db_xref="H-InvDB:HIT000264375"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:90282 IMAGE:5756382"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2141
/gene="SLC11A1"
/db_xref="GeneID:6556"
/db_xref="HGNC:HGNC:10907"
/db_xref="MIM:600266"
CDS 489..1787
/gene="SLC11A1"
/codon_start=1
/product="SLC11A1 protein"
/protein_id="AAH71165.1"
/db_xref="GeneID:6556"
/db_xref="HGNC:HGNC:10907"
/db_xref="MIM:600266"
/translation="MVRCQLTATSTSQVPRTVLWLTIELAIVGSDMQEVIGTAIAFNL
LSAGRIPLWGGVLITIVDTFFFLFLDNYGLRKLEAFFGLLITIMALTFGYEYVVARPE
QGALLRGLFLPSCPGCGHPELLQAVGIVGAIIMPHNIYLHSALVKSREIDRARRADIR
EANMYFLIEATIALSVSFIINLFVMAVFGQAFYQKTNQAAFNICANSSLHDYAKIFPM
NNATVAVDIYQGGVILGCLFGPAALYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLRLR
WSRFARVLLTRSCAILPTVLVAVFRDLRDLSGLNDLLNVLQSLLLPFAVLPILTFTSM
PTLMQEFANGLLNKVVTSSIMVLVCAINLYFVVSYLPSLPHPAYFGLAALLAAAYLGL
STYLVWTCCLAHGATFLAHSSHHHFLYGLLEEDQKGETSG"
BASE COUNT 457 a 679 c 560 g 445 t
ORIGIN
1 ggctgaggag ctgcccagag caccgctcac actcccagag tacctgaagt cggcatttca
61 atgacaggtg acaagggtcc ccaaaggcta agcgggtcca gctatggttc catctccagc
121 ccgaccagcc cgaccagccc agggccacag caagcacctc ccagagagac ctacctgagt
181 gagaagatcc ccatcccaga cacaaaaccg ggcaccttca gcctgcggaa gctatgggcc
241 ttcacggggc ctggctttct catgagcatt gctttcctgg acccaggaaa catcgagtca
301 gatcttcagg ctggcgccgt ggcgggattc aaacttctct gggtgctgct ctgggccacc
361 gtgttgggct tgctctgcca gcgactggct gcacgtctgg gcgtggtgac aggcaaggac
421 ttgggcgagg tctgccatct ctactaccct aagtcggagt ctcgctccgt cgcccagtca
481 ggagtgcaat ggtgcgatgt cagctcactg caacctctac ctcccaggtg ccccgcaccg
541 tcctctggct gaccatcgag ctagccattg tgggctccga catgcaggaa gtcatcggca
601 cggccattgc attcaatctg ctctcagctg gacgaatccc actctggggt ggcgtcctca
661 tcaccatcgt ggacaccttc ttcttcctct tcctcgataa ctacgggctg cggaagctgg
721 aagctttttt tggactcctt ataaccatta tggccttgac ctttggctat gagtatgtgg
781 tggcgcgtcc tgagcaggga gcgcttcttc ggggcctgtt cctgccctcg tgcccgggct
841 gcggccaccc cgagctgctg caggcggtgg gcattgttgg cgccatcatc atgccccaca
901 acatctacct gcactcggcc ctggtcaagt ctcgagagat agaccgggcc cgccgagcgg
961 acatcagaga agccaacatg tacttcctga ttgaggccac catcgccctg tccgtctcct
1021 ttatcatcaa cctctttgtc atggctgtct ttgggcaggc cttctaccag aaaaccaacc
1081 aggctgcgtt caacatctgt gccaacagca gcctccacga ctacgccaag atcttcccca
1141 tgaacaacgc caccgtggcc gtggacattt accagggggg cgtgatcctg ggctgcctgt
1201 tcggccccgc ggccctctac atctgggcca taggtctcct ggcggctggg cagagctcca
1261 ccatgacggg cacctacgcg ggacagttcg tgatggaggg cttcctgagg ctgcggtggt
1321 cacgcttcgc ccgtgtcctc ctcacccgct cctgcgccat cctgcccacc gtgctcgtgg
1381 ctgtcttccg ggacctgagg gacttgtcgg gcctcaatga tctgctcaac gtgctgcaga
1441 gcctgctgct cccgttcgcc gtgctgccca tcctcacgtt caccagcatg cccaccctca
1501 tgcaggagtt tgccaatggc ctgctgaaca aggtcgtcac ctcttccatc atggtgctag
1561 tctgcgccat caacctctac ttcgtggtca gctatctgcc cagcctgccc caccctgcct
1621 acttcggcct tgcagccttg ctggccgcag cctacctggg cctcagcacc tacctggtct
1681 ggacctgttg ccttgcccac ggagccacct ttctggccca cagctcccac caccacttcc
1741 tgtatgggct ccttgaagag gaccagaaag gggagacctc tggctaggcc cacaccaggg
1801 cctggctggg agtggcatgt atgacgtgac tggcctgctg gatgtggagg gggcgcgtgc
1861 aggcagcagg atggagtggg acagttcctg agaccagcca acctgggggc tttagggacc
1921 tgctgtttcc tagcgcagcc atgtgattac cctctgggtc tcagtgtcct catctgtaaa
1981 atggagacac caccaccctt gccatggagg ttaagcactt taacacagtg tctggcactt
2041 gggacaaaaa caaacaaaca aacaaaaaac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//