LOCUS BC066332 908 bp mRNA linear HUM 03-NOV-2006 DEFINITION Homo sapiens HD domain containing 2, mRNA (cDNA clone MGC:87330 IMAGE:5294646), complete cds. ACCESSION BC066332 VERSION BC066332.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 908) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 908) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-FEB-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 168 Row: c Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7705623. FEATURES Location/Qualifiers source 1..908 /db_xref="H-InvDB:HIT000262223" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87330 IMAGE:5294646" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..908 /gene="HDDC2" /gene_synonym="CGI-130" /gene_synonym="dJ167O5.2" /gene_synonym="NS5ATP2" /db_xref="GeneID:51020" /db_xref="HGNC:HGNC:21078" CDS 19..633 /gene="HDDC2" /gene_synonym="CGI-130" /gene_synonym="dJ167O5.2" /gene_synonym="NS5ATP2" /codon_start=1 /product="HD domain containing 2" /protein_id="AAH66332.1" /db_xref="GeneID:51020" /db_xref="HGNC:HGNC:21078" /translation="MASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPE SVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRRE EEAMKQITQLLPEDLRKELYELWEEYETRSSAEAKFVKQLDQCEMILQASEYEDLEHK PGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAASEPHS" BASE COUNT 279 a 199 c 219 g 211 t ORIGIN 1 agcggggtcg gtggccacat ggcttcggtc tcctctgcga ccttctcggg ccacggggct 61 cggtccctac tgcagttcct gcggctggta gggcagctca agagagtccc acgaactggc 121 tgggtataca gaaatgtcca gaggccggag agcgtttcag atcacatgta ccggatggca 181 gttatggcta tggtgatcaa agatgaccgt cttaacaaag accgatgtgt acgcctagcc 241 ctggttcatg atatggcaga atgcatcgtt ggggacatag caccagcaga taacatcccc 301 aaagaagaaa aacataggcg agaagaggaa gctatgaagc agataaccca gctcctacca 361 gaggacctca gaaaggagct ctatgaactt tgggaagagt acgagacccg atctagtgca 421 gaagccaaat ttgtgaagca gctagaccaa tgtgaaatga ttcttcaagc atctgaatat 481 gaagaccttg aacacaaacc tgggagactg caagacttct atgattccac agcaggaaaa 541 ttcaatcacc ctgagatagt ccagcttgtt tctgaacttg aggcagaaag aagcactaac 601 atagctgcag ctgccagtga gccacactcc tgagacactc tctaaattgc tgcactcctg 661 taacaaacat tatttttcca tttcattgta ttgtgttttg ccattgttgg tctgttgatt 721 tccctagatg tgagtctgtt tgttttcaat tgtctgaact tcagcaagaa atgtgataca 781 acttgggcac taaaagaagc cacagaacag gaagcggtca tgaaagtgcc atggatgaac 841 actggaggtg gcagtgcctg tttatgaact aaataaataa atattaaaca ccaaaaaaaa 901 aaaaaaaa //