LOCUS BC066332 908 bp mRNA linear HUM 03-NOV-2006
DEFINITION Homo sapiens HD domain containing 2, mRNA (cDNA clone MGC:87330
IMAGE:5294646), complete cds.
ACCESSION BC066332
VERSION BC066332.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 908)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 908)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-FEB-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: c Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705623.
FEATURES Location/Qualifiers
source 1..908
/db_xref="H-InvDB:HIT000262223"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87330 IMAGE:5294646"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..908
/gene="HDDC2"
/gene_synonym="CGI-130"
/gene_synonym="dJ167O5.2"
/gene_synonym="NS5ATP2"
/db_xref="GeneID:51020"
/db_xref="HGNC:HGNC:21078"
CDS 19..633
/gene="HDDC2"
/gene_synonym="CGI-130"
/gene_synonym="dJ167O5.2"
/gene_synonym="NS5ATP2"
/codon_start=1
/product="HD domain containing 2"
/protein_id="AAH66332.1"
/db_xref="GeneID:51020"
/db_xref="HGNC:HGNC:21078"
/translation="MASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPE
SVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRRE
EEAMKQITQLLPEDLRKELYELWEEYETRSSAEAKFVKQLDQCEMILQASEYEDLEHK
PGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAASEPHS"
BASE COUNT 279 a 199 c 219 g 211 t
ORIGIN
1 agcggggtcg gtggccacat ggcttcggtc tcctctgcga ccttctcggg ccacggggct
61 cggtccctac tgcagttcct gcggctggta gggcagctca agagagtccc acgaactggc
121 tgggtataca gaaatgtcca gaggccggag agcgtttcag atcacatgta ccggatggca
181 gttatggcta tggtgatcaa agatgaccgt cttaacaaag accgatgtgt acgcctagcc
241 ctggttcatg atatggcaga atgcatcgtt ggggacatag caccagcaga taacatcccc
301 aaagaagaaa aacataggcg agaagaggaa gctatgaagc agataaccca gctcctacca
361 gaggacctca gaaaggagct ctatgaactt tgggaagagt acgagacccg atctagtgca
421 gaagccaaat ttgtgaagca gctagaccaa tgtgaaatga ttcttcaagc atctgaatat
481 gaagaccttg aacacaaacc tgggagactg caagacttct atgattccac agcaggaaaa
541 ttcaatcacc ctgagatagt ccagcttgtt tctgaacttg aggcagaaag aagcactaac
601 atagctgcag ctgccagtga gccacactcc tgagacactc tctaaattgc tgcactcctg
661 taacaaacat tatttttcca tttcattgta ttgtgttttg ccattgttgg tctgttgatt
721 tccctagatg tgagtctgtt tgttttcaat tgtctgaact tcagcaagaa atgtgataca
781 acttgggcac taaaagaagc cacagaacag gaagcggtca tgaaagtgcc atggatgaac
841 actggaggtg gcagtgcctg tttatgaact aaataaataa atattaaaca ccaaaaaaaa
901 aaaaaaaa
//