LOCUS BC065030 3675 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens Hermansky-Pudlak syndrome 4, mRNA (cDNA clone MGC:70469 IMAGE:6148557), complete cds. ACCESSION BC065030 VERSION BC065030.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3675) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3675) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 140 Row: j Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23110973. FEATURES Location/Qualifiers source 1..3675 /db_xref="H-InvDB:HIT000261733" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:70469 IMAGE:6148557" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3675 /gene="HPS4" /gene_synonym="bK1048E9.4" /gene_synonym="bK1048E9.5" /gene_synonym="KIAA1667" /gene_synonym="LE" /db_xref="GeneID:89781" /db_xref="HGNC:HGNC:15844" /db_xref="MIM:606682" CDS 391..2517 /gene="HPS4" /gene_synonym="bK1048E9.4" /gene_synonym="bK1048E9.5" /gene_synonym="KIAA1667" /gene_synonym="LE" /codon_start=1 /product="Hermansky-Pudlak syndrome 4" /protein_id="AAH65030.1" /db_xref="GeneID:89781" /db_xref="HGNC:HGNC:15844" /db_xref="MIM:606682" /translation="MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQ TLLDQQELLCGQIAGVVRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPD VSCKRFLDQLVGFFNFYNGPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSL WNLDQTKVEPLLLLKAARILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRT APQEQRLPTGEDAPQEHGAALPPNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGL QDGSAQHHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLE SIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHV PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHS SQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLEC SSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKGLVLSLLAEEPLLGDSA AIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTYYDRIQSLLMANLPQVATP HDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYFQQLAPAARSSGF PNPQDGAFSLSGKAKQKLLKHGVNLL" BASE COUNT 917 a 931 c 949 g 878 t ORIGIN 1 ctttagaaca ccagctctag catgcatctc ccacttttgg ctttcctgga gaggagcttg 61 aagaggtggt tctgcagaca gccacagtga tacttaggaa accagaggaa tggatttgac 121 ttttctgcta ggattctctg ttatagtttc tccctgagtt gtaagaggca tggaaatata 181 catgaaactg aagaacctgc aaggaaggga agtggaactt tccatgctga gtgaaaacta 241 accaagtggc agttgtgact gaaaacactg aaacctacca cgtccagatt cactggattg 301 ggggatagag gaacggtcac agctagggag aaagaagtga taccggaaaa gaaaacctaa 361 atgaagagaa tgaggatgac tgcacagtag atggccacct ctacctccac agaggcaaag 421 tcagcctcgt ggtggaatta tttttttctt tatgatggtt ccaaggtaaa ggaagaaggc 481 gatccaacaa gagctggcat ttgttacttt tatccttccc agaccctgct agaccaacag 541 gagttgcttt gtggacagat tgctggagtt gtccgctgtg tttctgacat ttctgactct 601 cctcctactc ttgttcgtct gagaaaactg aagtttgcca taaaagttga tggagattac 661 ctttgggtgc tgggctgtgc tgtggagctc cctgatgtca gctgcaagcg gtttctggat 721 cagctagttg gattctttaa tttttacaat ggacctgttt ccctagctta tgagaactgt 781 tctcaggaag aactgagcac ggagtgggac accttcatcg agcaaattct gaaaaacacc 841 agtgatctgc ataagatttt caattccctc tggaacttgg accaaactaa agtggagccc 901 ctgttgttgc tgaaggcagc ccgcattctg cagacctgcc agcgctcacc tcacattctc 961 gctggctgca tcctctataa aggactgatt gtcagcaccc aactcccgcc ctccctcacc 1021 gccaaggtcc tgcttcaccg aacagcacct caggagcaga gactccctac gggagaggat 1081 gccccgcagg aacatggagc ggcattgccc ccgaatgtcc agattatccc tgtttttgtg 1141 accaaagagg aagccattag tctccacgag ttcccggtgg aacagatgac aaggtctcta 1201 gcatctccag caggactcca ggatggttca gcccagcacc atccaaaggg tgggagcaca 1261 tctgccctga aagaaaacgc cactggccat gtggaatcca tggcctggac caccccagat 1321 cccacatccc ctgacgaagc ttgtccagat ggcaggaagg agaacggatg cttgtctggc 1381 catgatctgg agagcatcag gcccgcagga ctgcacaact ctgccagggg tgaggttctt 1441 ggcctcagct cctccctggg gaaggaacta gtctttctcc aagaagaact cgacttgtct 1501 gaaatccaca ttccagaggc tcaggaagtg gaaatggcct caggtcattt tgccttccta 1561 catgtgcctg ttccagatgg cagggctcct tactgcaagg catctctcag cgcctccagc 1621 agcctggaac ccacgcctcc tgaggacaca gccatcagca gcttgcgccc tccctctgct 1681 cctgagatgc tgacccagca tggagcccaa gagcagctcg aagaccatcc tggccatagc 1741 agccaagccc ccattcccag agcagaccct ctccccagaa ggacccgcag gcccttgtta 1801 ttgcctcgct tagatccagg acagagagga aacaagcttc ccacggggga acaaggcctg 1861 gatgaggatg ttgatggggt ctgtgaaagc cacgcagccc ctggtctgga atgcagttca 1921 ggctcagcaa actgtcaggg tgctggcccc tctgcagatg gaatcagctc caggctgaca 1981 ccagcagagt cctgcatggg gctcgtgagg atgaatctct acactcactg cgtcaaaggg 2041 ctggtgctgt ccctgctggc tgaggagccg ctgctgggag acagcgcagc catagaggaa 2101 gtgtaccaca gcagcctggc ttcactgaat gggctggaag tccacctgaa agagacgctg 2161 cccagggatg aggcagcctc cacgagcagc acctacaact tcacatatta cgaccgcatt 2221 cagagcttgc tgatggcaaa cctgccgcag gtggccaccc cgcatgatcg ccgcttcctc 2281 caggccgtca gcctgatgca tagcgaattt gcccagctgc ccgcgcttta tgaaatgact 2341 gtcagaaatg cctccacggc tgtgtacgcc tgttgcaacc ccatccagga gacatatttc 2401 cagcagctgg cacctgcagc acggagctcc ggcttcccaa accctcagga tggcgccttc 2461 agcctctccg gcaaagcaaa gcagaagctg ctgaagcacg gggtgaactt gctctgaact 2521 gcacccagga ggtgactggg aaggagaaaa ccagcaaagg aagctctgcc ttttataatt 2581 gaaaaggccc ctctatttta tttttcttga aaacattccc ttttttagga accaaatgat 2641 atttgagttt ttgttattcc ttttgcagat tgggatgtgt tttgggggca ggggttagtt 2701 cttcaggtcg gcagacccag agcacttgat aaagaactgt atttaatcgg tagtgttggg 2761 gccgggacgg gcttggctcc ctctctgcca tactgagcct gaggtatttc atatctcctg 2821 ctgttccatc ccagcttgaa ttggtgccac aagcttccaa gttggcattt tttctagaac 2881 ctgatcgtcc actagcccag agtgtgtgtg ttcaaccccc acaccaggtg gtggtaggcg 2941 gtgtgactgc acagcgaggt gccggatctg tgagcaggcc gactccactc ccacgccgca 3001 ggtaggtttc tccagtgcgc tcttgctggg aggtccggat cgttcctgca gggaagcggc 3061 agcacacgga gaccacttgg ttgaattctg ttggaactct actcaaatct aggggcgtct 3121 tctttggacc cacaatgggg gcaagcctta ataatatgga agggagtttg ggctttagag 3181 atccctttat aaaagctctg ggggctgagc cctgagaatt cagtgacaac aggaccaacc 3241 tgcgctgcct ttgactacaa gtgggccgtg cagctggttc ctctcgagcg agtgtcccta 3301 aataggagtt tacaagatgt ctgggggtaa aagcactgtg cttttcagtg gtggctgcgt 3361 gaaagggagc gacactcagc tgtgtgttcc tgggcttgtg tggtacttag aacctcagtt 3421 ctattacgtt atagtcagac atttttttga cagtatgaga cagactgcag gatgaaaata 3481 tttgtcaaaa tcttaactga atgtttactg gaagtacttg agattccatt tgagagttgt 3541 attgttaata atttcatgtc agtgaactga tatctgatgt ttatgatatg gtgtcttttt 3601 cttgaaacaa gcttccaagg gctagaaata aaatagccaa aaaatgctgg aaaaaaaaaa 3661 aaaaaaaaaa aaaaa //