LOCUS BC065030 3675 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Hermansky-Pudlak syndrome 4, mRNA (cDNA clone
MGC:70469 IMAGE:6148557), complete cds.
ACCESSION BC065030
VERSION BC065030.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3675)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: j Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23110973.
FEATURES Location/Qualifiers
source 1..3675
/db_xref="H-InvDB:HIT000261733"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70469 IMAGE:6148557"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3675
/gene="HPS4"
/gene_synonym="bK1048E9.4"
/gene_synonym="bK1048E9.5"
/gene_synonym="KIAA1667"
/gene_synonym="LE"
/db_xref="GeneID:89781"
/db_xref="HGNC:HGNC:15844"
/db_xref="MIM:606682"
CDS 391..2517
/gene="HPS4"
/gene_synonym="bK1048E9.4"
/gene_synonym="bK1048E9.5"
/gene_synonym="KIAA1667"
/gene_synonym="LE"
/codon_start=1
/product="Hermansky-Pudlak syndrome 4"
/protein_id="AAH65030.1"
/db_xref="GeneID:89781"
/db_xref="HGNC:HGNC:15844"
/db_xref="MIM:606682"
/translation="MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQ
TLLDQQELLCGQIAGVVRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPD
VSCKRFLDQLVGFFNFYNGPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSL
WNLDQTKVEPLLLLKAARILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRT
APQEQRLPTGEDAPQEHGAALPPNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGL
QDGSAQHHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLE
SIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHV
PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHS
SQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLEC
SSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKGLVLSLLAEEPLLGDSA
AIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTYYDRIQSLLMANLPQVATP
HDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYFQQLAPAARSSGF
PNPQDGAFSLSGKAKQKLLKHGVNLL"
BASE COUNT 917 a 931 c 949 g 878 t
ORIGIN
1 ctttagaaca ccagctctag catgcatctc ccacttttgg ctttcctgga gaggagcttg
61 aagaggtggt tctgcagaca gccacagtga tacttaggaa accagaggaa tggatttgac
121 ttttctgcta ggattctctg ttatagtttc tccctgagtt gtaagaggca tggaaatata
181 catgaaactg aagaacctgc aaggaaggga agtggaactt tccatgctga gtgaaaacta
241 accaagtggc agttgtgact gaaaacactg aaacctacca cgtccagatt cactggattg
301 ggggatagag gaacggtcac agctagggag aaagaagtga taccggaaaa gaaaacctaa
361 atgaagagaa tgaggatgac tgcacagtag atggccacct ctacctccac agaggcaaag
421 tcagcctcgt ggtggaatta tttttttctt tatgatggtt ccaaggtaaa ggaagaaggc
481 gatccaacaa gagctggcat ttgttacttt tatccttccc agaccctgct agaccaacag
541 gagttgcttt gtggacagat tgctggagtt gtccgctgtg tttctgacat ttctgactct
601 cctcctactc ttgttcgtct gagaaaactg aagtttgcca taaaagttga tggagattac
661 ctttgggtgc tgggctgtgc tgtggagctc cctgatgtca gctgcaagcg gtttctggat
721 cagctagttg gattctttaa tttttacaat ggacctgttt ccctagctta tgagaactgt
781 tctcaggaag aactgagcac ggagtgggac accttcatcg agcaaattct gaaaaacacc
841 agtgatctgc ataagatttt caattccctc tggaacttgg accaaactaa agtggagccc
901 ctgttgttgc tgaaggcagc ccgcattctg cagacctgcc agcgctcacc tcacattctc
961 gctggctgca tcctctataa aggactgatt gtcagcaccc aactcccgcc ctccctcacc
1021 gccaaggtcc tgcttcaccg aacagcacct caggagcaga gactccctac gggagaggat
1081 gccccgcagg aacatggagc ggcattgccc ccgaatgtcc agattatccc tgtttttgtg
1141 accaaagagg aagccattag tctccacgag ttcccggtgg aacagatgac aaggtctcta
1201 gcatctccag caggactcca ggatggttca gcccagcacc atccaaaggg tgggagcaca
1261 tctgccctga aagaaaacgc cactggccat gtggaatcca tggcctggac caccccagat
1321 cccacatccc ctgacgaagc ttgtccagat ggcaggaagg agaacggatg cttgtctggc
1381 catgatctgg agagcatcag gcccgcagga ctgcacaact ctgccagggg tgaggttctt
1441 ggcctcagct cctccctggg gaaggaacta gtctttctcc aagaagaact cgacttgtct
1501 gaaatccaca ttccagaggc tcaggaagtg gaaatggcct caggtcattt tgccttccta
1561 catgtgcctg ttccagatgg cagggctcct tactgcaagg catctctcag cgcctccagc
1621 agcctggaac ccacgcctcc tgaggacaca gccatcagca gcttgcgccc tccctctgct
1681 cctgagatgc tgacccagca tggagcccaa gagcagctcg aagaccatcc tggccatagc
1741 agccaagccc ccattcccag agcagaccct ctccccagaa ggacccgcag gcccttgtta
1801 ttgcctcgct tagatccagg acagagagga aacaagcttc ccacggggga acaaggcctg
1861 gatgaggatg ttgatggggt ctgtgaaagc cacgcagccc ctggtctgga atgcagttca
1921 ggctcagcaa actgtcaggg tgctggcccc tctgcagatg gaatcagctc caggctgaca
1981 ccagcagagt cctgcatggg gctcgtgagg atgaatctct acactcactg cgtcaaaggg
2041 ctggtgctgt ccctgctggc tgaggagccg ctgctgggag acagcgcagc catagaggaa
2101 gtgtaccaca gcagcctggc ttcactgaat gggctggaag tccacctgaa agagacgctg
2161 cccagggatg aggcagcctc cacgagcagc acctacaact tcacatatta cgaccgcatt
2221 cagagcttgc tgatggcaaa cctgccgcag gtggccaccc cgcatgatcg ccgcttcctc
2281 caggccgtca gcctgatgca tagcgaattt gcccagctgc ccgcgcttta tgaaatgact
2341 gtcagaaatg cctccacggc tgtgtacgcc tgttgcaacc ccatccagga gacatatttc
2401 cagcagctgg cacctgcagc acggagctcc ggcttcccaa accctcagga tggcgccttc
2461 agcctctccg gcaaagcaaa gcagaagctg ctgaagcacg gggtgaactt gctctgaact
2521 gcacccagga ggtgactggg aaggagaaaa ccagcaaagg aagctctgcc ttttataatt
2581 gaaaaggccc ctctatttta tttttcttga aaacattccc ttttttagga accaaatgat
2641 atttgagttt ttgttattcc ttttgcagat tgggatgtgt tttgggggca ggggttagtt
2701 cttcaggtcg gcagacccag agcacttgat aaagaactgt atttaatcgg tagtgttggg
2761 gccgggacgg gcttggctcc ctctctgcca tactgagcct gaggtatttc atatctcctg
2821 ctgttccatc ccagcttgaa ttggtgccac aagcttccaa gttggcattt tttctagaac
2881 ctgatcgtcc actagcccag agtgtgtgtg ttcaaccccc acaccaggtg gtggtaggcg
2941 gtgtgactgc acagcgaggt gccggatctg tgagcaggcc gactccactc ccacgccgca
3001 ggtaggtttc tccagtgcgc tcttgctggg aggtccggat cgttcctgca gggaagcggc
3061 agcacacgga gaccacttgg ttgaattctg ttggaactct actcaaatct aggggcgtct
3121 tctttggacc cacaatgggg gcaagcctta ataatatgga agggagtttg ggctttagag
3181 atccctttat aaaagctctg ggggctgagc cctgagaatt cagtgacaac aggaccaacc
3241 tgcgctgcct ttgactacaa gtgggccgtg cagctggttc ctctcgagcg agtgtcccta
3301 aataggagtt tacaagatgt ctgggggtaa aagcactgtg cttttcagtg gtggctgcgt
3361 gaaagggagc gacactcagc tgtgtgttcc tgggcttgtg tggtacttag aacctcagtt
3421 ctattacgtt atagtcagac atttttttga cagtatgaga cagactgcag gatgaaaata
3481 tttgtcaaaa tcttaactga atgtttactg gaagtacttg agattccatt tgagagttgt
3541 attgttaata atttcatgtc agtgaactga tatctgatgt ttatgatatg gtgtcttttt
3601 cttgaaacaa gcttccaagg gctagaaata aaatagccaa aaaatgctgg aaaaaaaaaa
3661 aaaaaaaaaa aaaaa
//