LOCUS BC064998 1487 bp mRNA linear HUM 13-JAN-2004 DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:75186 IMAGE:5785274), complete cds. ACCESSION BC064998 VERSION BC064998.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1487) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1487) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 139 Row: p Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1487 /db_xref="H-InvDB:HIT000261703" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:75186 IMAGE:5785274" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_71" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1487 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CAPN4" /gene_synonym="CDPS" /db_xref="GeneID:826" /db_xref="MIM:114170" CDS 153..959 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CAPN4" /gene_synonym="CDPS" /codon_start=1 /product="CAPNS1 protein" /protein_id="AAH64998.1" /db_xref="GeneID:826" /db_xref="MIM:114170" /translation="MFLVDSFLKGGGGGGGGGGGLGGGLGGVLGGLIGGAGGGGGGGG GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS" misc_feature 582..734 /gene="CAPNS1" /gene_synonym="30K" /gene_synonym="CANP" /gene_synonym="CANPS" /gene_synonym="CAPN4" /gene_synonym="CDPS" /note="EFh; Region: EF-hand, calcium binding motif" /db_xref="CDD:cd00051" BASE COUNT 305 a 466 c 425 g 291 t ORIGIN 1 gccgactccc agaactccgg acgtgtgcgg cggtgggcgc ccggcccgtg ccccctccgc 61 accccgcaac tccgactttg gcggccccca gacccggcga aaccgtgaag tctcggcctc 121 aggagccccc cagatccatg tgagtcgcag ccatgttcct ggttgactcg ttcttgaagg 181 gcggcggcgg cggcggcggg ggaggcgggg gcctgggtgg gggcctggga ggtgtgcttg 241 gaggcctgat cggcggggcc gggggcggcg gcggcggcgg cggcggcggc ggcggtggtg 301 gaggcggcgg tggcggtgga acggccatgc gcatcctagg cggagtcatc agcgccatca 361 gcgaggcggc tgcgcagtac aacccggagc ccccgccccc acgcacacat tactccaaca 421 ttgaggccaa cgagagtgag gaggtccggc agttccggag actctttgcc cagctggctg 481 gagatgacat ggaggtcagc gccacagaac tcatgaacat tctcaataag gttgtgacac 541 gacaccctga tctgaagact gatggttttg gcattgacac atgtcgcagc atggtggccg 601 tgatggatag cgacaccaca ggcaagctgg gctttgagga attcaagtac ttgtggaaca 661 acatcaaaag gtggcaggcc atatacaaac agttcgacac tgaccgatca gggaccattt 721 gcagtagtga actcccaggt gcctttgagg cagcagggtt ccacctgaat gagcatctct 781 ataacatgat catccgacgc tactcagatg aaagtgggaa catggatttt gacaacttca 841 tcagctgctt ggtcaggctg gacgccatgt tccgtgcctt caaatctctt gacaaagatg 901 gcactggaca aatccaggtg aacatccagg agtggctgca gctgactatg tattcctgaa 961 ctggagcccc agacccgccc cctcaccgcc ttgctatagg agtcacctgg agcctcggtc 1021 tctcccaggg ccgatcctgt ctgcagtcac atctttgtgg ggcctgctga cccacaagct 1081 tttgttctct cagtacttgt tacccagctt ctcaacatcc agggcccaat ttgccctgcc 1141 tggagttccc cctggctcta ggacactcta acaagctctg tccacgggtc tccccattcc 1201 caccaggccc tgcacacacc cactccgtaa cctctcccct gtacctgtgc caagcctagc 1261 acttgtgatg cctccatgcc ccgagggccc tctctcagtt ctgggaggat gactccagtc 1321 cctgcacgcc ctggcacacc cttcacggtt gctacccagg cggccaagct ccagaccgtg 1381 ccagacccag gtgccccagt gcctttgtct atattctgct cccagcctgc caggcccagg 1441 aggaaataaa catgccccag ttgctgatct ctaaaaaaaa aaaaaaa //