LOCUS BC064998 1487 bp mRNA linear HUM 13-JAN-2004
DEFINITION Homo sapiens calpain, small subunit 1, mRNA (cDNA clone MGC:75186
IMAGE:5785274), complete cds.
ACCESSION BC064998
VERSION BC064998.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1487)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1487)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1487
/db_xref="H-InvDB:HIT000261703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75186 IMAGE:5785274"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1487
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CAPN4"
/gene_synonym="CDPS"
/db_xref="GeneID:826"
/db_xref="MIM:114170"
CDS 153..959
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CAPN4"
/gene_synonym="CDPS"
/codon_start=1
/product="CAPNS1 protein"
/protein_id="AAH64998.1"
/db_xref="GeneID:826"
/db_xref="MIM:114170"
/translation="MFLVDSFLKGGGGGGGGGGGLGGGLGGVLGGLIGGAGGGGGGGG
GGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFR
RLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG
FEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYS
DESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS"
misc_feature 582..734
/gene="CAPNS1"
/gene_synonym="30K"
/gene_synonym="CANP"
/gene_synonym="CANPS"
/gene_synonym="CAPN4"
/gene_synonym="CDPS"
/note="EFh; Region: EF-hand, calcium binding motif"
/db_xref="CDD:cd00051"
BASE COUNT 305 a 466 c 425 g 291 t
ORIGIN
1 gccgactccc agaactccgg acgtgtgcgg cggtgggcgc ccggcccgtg ccccctccgc
61 accccgcaac tccgactttg gcggccccca gacccggcga aaccgtgaag tctcggcctc
121 aggagccccc cagatccatg tgagtcgcag ccatgttcct ggttgactcg ttcttgaagg
181 gcggcggcgg cggcggcggg ggaggcgggg gcctgggtgg gggcctggga ggtgtgcttg
241 gaggcctgat cggcggggcc gggggcggcg gcggcggcgg cggcggcggc ggcggtggtg
301 gaggcggcgg tggcggtgga acggccatgc gcatcctagg cggagtcatc agcgccatca
361 gcgaggcggc tgcgcagtac aacccggagc ccccgccccc acgcacacat tactccaaca
421 ttgaggccaa cgagagtgag gaggtccggc agttccggag actctttgcc cagctggctg
481 gagatgacat ggaggtcagc gccacagaac tcatgaacat tctcaataag gttgtgacac
541 gacaccctga tctgaagact gatggttttg gcattgacac atgtcgcagc atggtggccg
601 tgatggatag cgacaccaca ggcaagctgg gctttgagga attcaagtac ttgtggaaca
661 acatcaaaag gtggcaggcc atatacaaac agttcgacac tgaccgatca gggaccattt
721 gcagtagtga actcccaggt gcctttgagg cagcagggtt ccacctgaat gagcatctct
781 ataacatgat catccgacgc tactcagatg aaagtgggaa catggatttt gacaacttca
841 tcagctgctt ggtcaggctg gacgccatgt tccgtgcctt caaatctctt gacaaagatg
901 gcactggaca aatccaggtg aacatccagg agtggctgca gctgactatg tattcctgaa
961 ctggagcccc agacccgccc cctcaccgcc ttgctatagg agtcacctgg agcctcggtc
1021 tctcccaggg ccgatcctgt ctgcagtcac atctttgtgg ggcctgctga cccacaagct
1081 tttgttctct cagtacttgt tacccagctt ctcaacatcc agggcccaat ttgccctgcc
1141 tggagttccc cctggctcta ggacactcta acaagctctg tccacgggtc tccccattcc
1201 caccaggccc tgcacacacc cactccgtaa cctctcccct gtacctgtgc caagcctagc
1261 acttgtgatg cctccatgcc ccgagggccc tctctcagtt ctgggaggat gactccagtc
1321 cctgcacgcc ctggcacacc cttcacggtt gctacccagg cggccaagct ccagaccgtg
1381 ccagacccag gtgccccagt gcctttgtct atattctgct cccagcctgc caggcccagg
1441 aggaaataaa catgccccag ttgctgatct ctaaaaaaaa aaaaaaa
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