LOCUS BC063646 2556 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens collagen, type IX, alpha 1, mRNA (cDNA clone MGC:74763 IMAGE:4914907), complete cds. ACCESSION BC063646 VERSION BC063646.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2556) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2556) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 134 Row: n Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 17978503. FEATURES Location/Qualifiers source 1..2556 /db_xref="H-InvDB:HIT000261100" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:74763 IMAGE:4914907" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2556 /gene="COL9A1" /gene_synonym="DJ149L1.1.2" /gene_synonym="MED" /db_xref="GeneID:1297" /db_xref="HGNC:HGNC:2217" /db_xref="MIM:120210" CDS 131..2167 /gene="COL9A1" /gene_synonym="DJ149L1.1.2" /gene_synonym="MED" /codon_start=1 /product="collagen, type IX, alpha 1" /protein_id="AAH63646.1" /db_xref="GeneID:1297" /db_xref="HGNC:HGNC:2217" /db_xref="MIM:120210" /translation="MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPG IDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGE PGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIG FHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGA QGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDR GAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPG IPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGS PGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGEL GDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG PPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGF PGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPAS YGRNGRDGERGPPGVAGIPGVPGPPGPPGLPGFCEPASCTMQAGQRAFNKGPDP" BASE COUNT 590 a 647 c 840 g 479 t ORIGIN 1 ggcaaccgct actcccgggg gtgctttttc tgcagggacg aagtgccacc tatgctagtg 61 gcgggtctgg aagcctagag gggaaccagg ctgcagagcc gggccaaggg attagcggcg 121 ggcggcgggc atggcctgga ctgcgcggga ccgcggggcc ctggggctgc tgctgttggg 181 gctctgcttg tgcgcggctc aaagaggtcc cccgggtgag cagggtcctc ccgggcctcc 241 gggcccccct ggagttccag gcatcgatgg catcgacggt gaccgaggtc ctaagggccc 301 cccgggcccc ccgggtcctg caggtgaacc gggaaagcca ggagctccag gcaagcctgg 361 cacacctggc gctgatggat taacaggacc tgatggatcc cctggctcca ttgggtcaaa 421 gggacaaaaa ggagaacctg gtgtgcctgg atcgcgtgga tttccaggcc gtggtattcc 481 tggaccccct ggtcctcctg ggacagcagg actccctgga gagcttggcc gtgtaggacc 541 tgttggtgac cctgggagaa gaggaccacc tggcccccct ggccccccag gacccagagg 601 aacaattggc tttcatgatg gagatccatt gtgtcccaat gcctgtccac caggtcgctc 661 aggatatcca ggcctaccag gcatgagggg tcataaaggg gctaaaggag aaattggtga 721 accaggaaga caaggacaca agggtgaaga aggtgaccag ggagaactcg gagaagttgg 781 agctcaagga cctccaggag cccagggttt gcgaggcatc accggcatag ttggggacaa 841 aggggaaaaa ggtgctcggg gcttagatgg tgaacctggg cctcagggtc ttcctggtgc 901 acctggtgat caaggacagc gaggacctcc aggagaagca ggtcccaaag gagatagagg 961 ggctgaaggt gctagaggaa ttcctggtct ccctgggccc aaaggagaca cgggtttgcc 1021 aggtgtggat ggccgtgatg ggatccctgg aatgcctgga acaaagggtg aaccaggaaa 1081 acctgggcct cctggtgatg caggattgca ggggttacca ggtgtaccgg gaattcctgg 1141 tgcaaagggt gttgctggtg aaaagggtag cacaggtgct ccagggaagc ctggtcagat 1201 gggaaattca ggcaaaccgg gccaacaggg gcctccagga gaggtgggac cccgaggacc 1261 ccaggggctt cctggcagta gaggagaatt aggaccagtg ggatccccag gcctaccagg 1321 taaactgggt tctctgggta gccctggcct ccctggcttg cctgggcccc ctggacttcc 1381 tggaatgaaa ggtgacaggg gtgtagtcgg tgaaccgggt ccaaagggtg aacagggtgc 1441 ctctggtgaa gaaggtgaag caggagaaag gggggaactt ggagatatag gattacctgg 1501 cccaaaggga tctgcaggta atcctgggga acctggcttg agagggcctg agggaagtcg 1561 ggggcttcct ggagtggaag gaccaagagg accacctgga ccccggggtg tgcagggaga 1621 acagggtgcc accggcctgc ctggtgtcca gggccctccg ggtagagcac cgacagatca 1681 gcacattaag caggtttgca tgagagtcat acaagaacat tttgctgaga tggctgccag 1741 tcttaagcgt ccagactcag gtgccactgg gcttcctgga aggcctggcc ctcctggtcc 1801 ccccggccct cctggagaga atggtttccc aggccagatg ggaattcgtg gccttccggg 1861 cattaagggg ccccctggtg ctcttggttt gaggggacct aaaggtgact tgggagaaaa 1921 gggggagcgt ggccctccag gaagaggtcc caacggtttg cctggagcta taggtctccc 1981 aggtgaccca ggccctgcca gctatggcag aaatggccga gacggtgagc gaggcccccc 2041 aggggtggca ggaattcctg gagtgcctgg acccccggga cctcctgggc ttcccggttt 2101 ctgtgagcca gcctcctgca ccatgcaggc tggtcagcga gcatttaaca aagggcctga 2161 cccttgaaag gcttactgct gcatggctgt ctgcatgaac cacgcctggt gaaggagcct 2221 gggtgagaaa caccatccaa agctggggca aagatgatta ccttcagcat gattacaatg 2281 tattaccttc agtatgatta cagaagtcct acttgacaat cacatataga agaacggtgc 2341 tattcagtaa gttctctttc ctttcccttg gagggaagac agcagagtca tcagttaaaa 2401 aaaaaaaaga aaaccaaaca cctcccttga acaaatttat actcctgttc ccaggatctt 2461 gagctttagt gtgctatacc tatgtgtctt atcgtgggcc actgtgccaa taaacaaaaa 2521 caactgtttg gtttacctca aaaaaaaaaa aaaaaa //