LOCUS BC063646 2556 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens collagen, type IX, alpha 1, mRNA (cDNA clone MGC:74763
IMAGE:4914907), complete cds.
ACCESSION BC063646
VERSION BC063646.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2556)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2556)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: n Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17978503.
FEATURES Location/Qualifiers
source 1..2556
/db_xref="H-InvDB:HIT000261100"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74763 IMAGE:4914907"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2556
/gene="COL9A1"
/gene_synonym="DJ149L1.1.2"
/gene_synonym="MED"
/db_xref="GeneID:1297"
/db_xref="HGNC:HGNC:2217"
/db_xref="MIM:120210"
CDS 131..2167
/gene="COL9A1"
/gene_synonym="DJ149L1.1.2"
/gene_synonym="MED"
/codon_start=1
/product="collagen, type IX, alpha 1"
/protein_id="AAH63646.1"
/db_xref="GeneID:1297"
/db_xref="HGNC:HGNC:2217"
/db_xref="MIM:120210"
/translation="MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPG
IDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGE
PGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIG
FHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGA
QGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDR
GAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPG
IPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGS
PGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGEL
GDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG
PPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGF
PGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPAS
YGRNGRDGERGPPGVAGIPGVPGPPGPPGLPGFCEPASCTMQAGQRAFNKGPDP"
BASE COUNT 590 a 647 c 840 g 479 t
ORIGIN
1 ggcaaccgct actcccgggg gtgctttttc tgcagggacg aagtgccacc tatgctagtg
61 gcgggtctgg aagcctagag gggaaccagg ctgcagagcc gggccaaggg attagcggcg
121 ggcggcgggc atggcctgga ctgcgcggga ccgcggggcc ctggggctgc tgctgttggg
181 gctctgcttg tgcgcggctc aaagaggtcc cccgggtgag cagggtcctc ccgggcctcc
241 gggcccccct ggagttccag gcatcgatgg catcgacggt gaccgaggtc ctaagggccc
301 cccgggcccc ccgggtcctg caggtgaacc gggaaagcca ggagctccag gcaagcctgg
361 cacacctggc gctgatggat taacaggacc tgatggatcc cctggctcca ttgggtcaaa
421 gggacaaaaa ggagaacctg gtgtgcctgg atcgcgtgga tttccaggcc gtggtattcc
481 tggaccccct ggtcctcctg ggacagcagg actccctgga gagcttggcc gtgtaggacc
541 tgttggtgac cctgggagaa gaggaccacc tggcccccct ggccccccag gacccagagg
601 aacaattggc tttcatgatg gagatccatt gtgtcccaat gcctgtccac caggtcgctc
661 aggatatcca ggcctaccag gcatgagggg tcataaaggg gctaaaggag aaattggtga
721 accaggaaga caaggacaca agggtgaaga aggtgaccag ggagaactcg gagaagttgg
781 agctcaagga cctccaggag cccagggttt gcgaggcatc accggcatag ttggggacaa
841 aggggaaaaa ggtgctcggg gcttagatgg tgaacctggg cctcagggtc ttcctggtgc
901 acctggtgat caaggacagc gaggacctcc aggagaagca ggtcccaaag gagatagagg
961 ggctgaaggt gctagaggaa ttcctggtct ccctgggccc aaaggagaca cgggtttgcc
1021 aggtgtggat ggccgtgatg ggatccctgg aatgcctgga acaaagggtg aaccaggaaa
1081 acctgggcct cctggtgatg caggattgca ggggttacca ggtgtaccgg gaattcctgg
1141 tgcaaagggt gttgctggtg aaaagggtag cacaggtgct ccagggaagc ctggtcagat
1201 gggaaattca ggcaaaccgg gccaacaggg gcctccagga gaggtgggac cccgaggacc
1261 ccaggggctt cctggcagta gaggagaatt aggaccagtg ggatccccag gcctaccagg
1321 taaactgggt tctctgggta gccctggcct ccctggcttg cctgggcccc ctggacttcc
1381 tggaatgaaa ggtgacaggg gtgtagtcgg tgaaccgggt ccaaagggtg aacagggtgc
1441 ctctggtgaa gaaggtgaag caggagaaag gggggaactt ggagatatag gattacctgg
1501 cccaaaggga tctgcaggta atcctgggga acctggcttg agagggcctg agggaagtcg
1561 ggggcttcct ggagtggaag gaccaagagg accacctgga ccccggggtg tgcagggaga
1621 acagggtgcc accggcctgc ctggtgtcca gggccctccg ggtagagcac cgacagatca
1681 gcacattaag caggtttgca tgagagtcat acaagaacat tttgctgaga tggctgccag
1741 tcttaagcgt ccagactcag gtgccactgg gcttcctgga aggcctggcc ctcctggtcc
1801 ccccggccct cctggagaga atggtttccc aggccagatg ggaattcgtg gccttccggg
1861 cattaagggg ccccctggtg ctcttggttt gaggggacct aaaggtgact tgggagaaaa
1921 gggggagcgt ggccctccag gaagaggtcc caacggtttg cctggagcta taggtctccc
1981 aggtgaccca ggccctgcca gctatggcag aaatggccga gacggtgagc gaggcccccc
2041 aggggtggca ggaattcctg gagtgcctgg acccccggga cctcctgggc ttcccggttt
2101 ctgtgagcca gcctcctgca ccatgcaggc tggtcagcga gcatttaaca aagggcctga
2161 cccttgaaag gcttactgct gcatggctgt ctgcatgaac cacgcctggt gaaggagcct
2221 gggtgagaaa caccatccaa agctggggca aagatgatta ccttcagcat gattacaatg
2281 tattaccttc agtatgatta cagaagtcct acttgacaat cacatataga agaacggtgc
2341 tattcagtaa gttctctttc ctttcccttg gagggaagac agcagagtca tcagttaaaa
2401 aaaaaaaaga aaaccaaaca cctcccttga acaaatttat actcctgttc ccaggatctt
2461 gagctttagt gtgctatacc tatgtgtctt atcgtgggcc actgtgccaa taaacaaaaa
2521 caactgtttg gtttacctca aaaaaaaaaa aaaaaa
//