LOCUS BC063435 1905 bp mRNA linear HUM 24-JAN-2005 DEFINITION Homo sapiens host cell factor C1 (VP16-accessory protein), mRNA (cDNA clone IMAGE:5395387), complete cds. ACCESSION BC063435 VERSION BC063435.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1905) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1905) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 135 Row: n Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, GenomeScan gene prediction This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1905 /db_xref="H-InvDB:HIT000260895" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5395387" /tissue_type="Breast, mammary adenocarcinoma." /clone_lib="NIH_MGC_87" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1905 /gene="HCFC1" /gene_synonym="HCF-1" /gene_synonym="HCF1" /gene_synonym="HFC1" /db_xref="GeneID:3054" /db_xref="MIM:300019" CDS 540..1826 /gene="HCFC1" /gene_synonym="HCF-1" /gene_synonym="HCF1" /gene_synonym="HFC1" /codon_start=1 /product="HCFC1 protein" /protein_id="AAH63435.1" /db_xref="GeneID:3054" /db_xref="MIM:300019" /translation="MASAVSPANLPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKEL IVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVE YGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSE DPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKL VIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPL VMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRL YIWSGRDGYRKAWNNQVCCKDLWYLETEKPPPPARVQLVRANTNSLEVSWGAVATADS YLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSL" BASE COUNT 449 a 541 c 579 g 336 t ORIGIN 1 ggagggcagt taagatggcg gctcccacaa ttgtggtctg agcgccggcg gggctgcgac 61 gaccgcggcg cttgtggctc ctttccaccc gccccggaag ccggccagtg ctggggactt 121 gggggtgtgg gaaccgggcc ggggctccgc catttccggc gggggagggc tacgactgag 181 gaagggagga gagagaggcg gctcaagatg gcggctccca gggcctcccg cccgagcttg 241 taagcgggag cgcccggaca agtagtcggg gcgacgggac tcagcggcct ccagcttctt 301 gagcctaggc gctcgacagt ttcgggcggc tcttgcggag acggggtgag cgagaagaaa 361 gggaagagcc aaagggaagg agggcagtta agatggcggc ctccatggag tcgtctaccg 421 ctgtgtgaga aaccgcttct ccgtgagagc tgccttagac gaaagggggt gtgtgaaagg 481 aattgagggg ctcccttccc gcttgttgac ttctccccac cgcacccttt cccggaacta 541 tggcttcggc cgtgtcgccc gccaacttgc cagcggtgct tctgcagccc cgctggaagc 601 gagtggtggg ctggtcgggt ccggtgccac ggccccgcca cggccaccgc gccgtggcca 661 tcaaggagct catcgtggtg tttggcggcg gcaacgaggg aatagtggac gaactgcacg 721 tgtacaacac ggcaaccaac cagtggttca tcccagccgt gaggggggac attccccctg 781 ggtgtgcagc ctatggcttc gtgtgtgacg ggactcgcct cctggtgttt ggtgggatgg 841 tggagtatgg gaaatacagc aatgacctct acgaactcca ggcgagccgg tgggagtgga 901 agagactcaa agcaaagacg cccaaaaacg ggccccctcc gtgtcctcga ctcgggcaca 961 gcttctccct tgtgggcaac aaatgctacc tgtttggggg tctggccaat gatagcgagg 1021 acccaaagaa caacattcca aggtacctga atgacttata tatcctggaa ttacggccag 1081 gctctggagt ggtagcctgg gacattccca tcacttacgg ggtcctacca ccaccccggg 1141 agtcacatac tgccgtggtc tacaccgaaa aagacaataa gaagtccaag ctggtgatct 1201 acggcgggat gagtggctgc aggctggggg acctgtggac cctagatatt gacaccctga 1261 cgtggaataa gcccagtctc agcggggtgg cgcctcttcc tcgcagtctc cactcggcaa 1321 ccaccatcgg aaataaaatg tacgtgtttg gtggctgggt gcctctcgtc atggatgacg 1381 tcaaagtggc cacacacgag aaggagtgga agtgtaccaa cacgctggct tgtctcaacc 1441 tggataccat ggcctgggag accatcctga tggatacact ggaggacaac atcccccgtg 1501 ctcgggctgg ccactgcgca gtcgccatca acacccgcct gtacatttgg agtgggcgtg 1561 acggctaccg caaggcctgg aacaaccagg tctgctgcaa ggacctctgg tacctagaga 1621 cagaaaagcc accaccccca gcccgagtac aactggtacg cgccaacacc aactccctgg 1681 aggtgagctg gggggcagtg gcaacagccg acagctacct tctccagctc cagaaatatg 1741 acattcctgc cacggctgct actgccacct cccctacacc caatccggtc ccatctgtgc 1801 ctgccaaccc tcccaagagc ctttgaaaat gcaggattct aaacactcaa aaaaaaaaaa 1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa //