LOCUS BC063435 1905 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens host cell factor C1 (VP16-accessory protein), mRNA
(cDNA clone IMAGE:5395387), complete cds.
ACCESSION BC063435
VERSION BC063435.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1905)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1905)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: n Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1905
/db_xref="H-InvDB:HIT000260895"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5395387"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1905
/gene="HCFC1"
/gene_synonym="HCF-1"
/gene_synonym="HCF1"
/gene_synonym="HFC1"
/db_xref="GeneID:3054"
/db_xref="MIM:300019"
CDS 540..1826
/gene="HCFC1"
/gene_synonym="HCF-1"
/gene_synonym="HCF1"
/gene_synonym="HFC1"
/codon_start=1
/product="HCFC1 protein"
/protein_id="AAH63435.1"
/db_xref="GeneID:3054"
/db_xref="MIM:300019"
/translation="MASAVSPANLPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKEL
IVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVE
YGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSE
DPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKL
VIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPL
VMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRL
YIWSGRDGYRKAWNNQVCCKDLWYLETEKPPPPARVQLVRANTNSLEVSWGAVATADS
YLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSL"
BASE COUNT 449 a 541 c 579 g 336 t
ORIGIN
1 ggagggcagt taagatggcg gctcccacaa ttgtggtctg agcgccggcg gggctgcgac
61 gaccgcggcg cttgtggctc ctttccaccc gccccggaag ccggccagtg ctggggactt
121 gggggtgtgg gaaccgggcc ggggctccgc catttccggc gggggagggc tacgactgag
181 gaagggagga gagagaggcg gctcaagatg gcggctccca gggcctcccg cccgagcttg
241 taagcgggag cgcccggaca agtagtcggg gcgacgggac tcagcggcct ccagcttctt
301 gagcctaggc gctcgacagt ttcgggcggc tcttgcggag acggggtgag cgagaagaaa
361 gggaagagcc aaagggaagg agggcagtta agatggcggc ctccatggag tcgtctaccg
421 ctgtgtgaga aaccgcttct ccgtgagagc tgccttagac gaaagggggt gtgtgaaagg
481 aattgagggg ctcccttccc gcttgttgac ttctccccac cgcacccttt cccggaacta
541 tggcttcggc cgtgtcgccc gccaacttgc cagcggtgct tctgcagccc cgctggaagc
601 gagtggtggg ctggtcgggt ccggtgccac ggccccgcca cggccaccgc gccgtggcca
661 tcaaggagct catcgtggtg tttggcggcg gcaacgaggg aatagtggac gaactgcacg
721 tgtacaacac ggcaaccaac cagtggttca tcccagccgt gaggggggac attccccctg
781 ggtgtgcagc ctatggcttc gtgtgtgacg ggactcgcct cctggtgttt ggtgggatgg
841 tggagtatgg gaaatacagc aatgacctct acgaactcca ggcgagccgg tgggagtgga
901 agagactcaa agcaaagacg cccaaaaacg ggccccctcc gtgtcctcga ctcgggcaca
961 gcttctccct tgtgggcaac aaatgctacc tgtttggggg tctggccaat gatagcgagg
1021 acccaaagaa caacattcca aggtacctga atgacttata tatcctggaa ttacggccag
1081 gctctggagt ggtagcctgg gacattccca tcacttacgg ggtcctacca ccaccccggg
1141 agtcacatac tgccgtggtc tacaccgaaa aagacaataa gaagtccaag ctggtgatct
1201 acggcgggat gagtggctgc aggctggggg acctgtggac cctagatatt gacaccctga
1261 cgtggaataa gcccagtctc agcggggtgg cgcctcttcc tcgcagtctc cactcggcaa
1321 ccaccatcgg aaataaaatg tacgtgtttg gtggctgggt gcctctcgtc atggatgacg
1381 tcaaagtggc cacacacgag aaggagtgga agtgtaccaa cacgctggct tgtctcaacc
1441 tggataccat ggcctgggag accatcctga tggatacact ggaggacaac atcccccgtg
1501 ctcgggctgg ccactgcgca gtcgccatca acacccgcct gtacatttgg agtgggcgtg
1561 acggctaccg caaggcctgg aacaaccagg tctgctgcaa ggacctctgg tacctagaga
1621 cagaaaagcc accaccccca gcccgagtac aactggtacg cgccaacacc aactccctgg
1681 aggtgagctg gggggcagtg gcaacagccg acagctacct tctccagctc cagaaatatg
1741 acattcctgc cacggctgct actgccacct cccctacacc caatccggtc ccatctgtgc
1801 ctgccaaccc tcccaagagc ctttgaaaat gcaggattct aaacactcaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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