LOCUS BC063043 2534 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens perforin 1 (pore forming protein), mRNA (cDNA clone MGC:65093 IMAGE:5748582), complete cds. ACCESSION BC063043 VERSION BC063043.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2534) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2534) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: i Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 45935369. FEATURES Location/Qualifiers source 1..2534 /db_xref="H-InvDB:HIT000260750" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:65093 IMAGE:5748582" /tissue_type="Pancreas, Spleen, adult pooled" /clone_lib="NIH_MGC_120" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2534 /gene="PRF1" /gene_synonym="FLH2" /gene_synonym="HPLH2" /gene_synonym="MGC65093" /gene_synonym="P1" /gene_synonym="PFP" /db_xref="GeneID:5551" /db_xref="HGNC:HGNC:9360" /db_xref="MIM:170280" CDS 119..1786 /gene="PRF1" /gene_synonym="FLH2" /gene_synonym="HPLH2" /gene_synonym="MGC65093" /gene_synonym="P1" /gene_synonym="PFP" /codon_start=1 /product="perforin 1 (pore forming protein)" /protein_id="AAH63043.1" /db_xref="GeneID:5551" /db_xref="HGNC:HGNC:9360" /db_xref="MIM:170280" /translation="MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLA GEGVDVTSLRRSGSFPVDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGC QRHVTRAKVSSTEAVARDAARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQ KTHQDQYSFSTDTVECRFYSFHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISN YGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEA KACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPG SPGLVDYTLEPLHVLLDSQDPRREALRRALSQYLTDRARWRDCSRPCPPGRQKSPRDP CQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRT STVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEV RCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQMLLGEPPGNRSGAVW" BASE COUNT 544 a 774 c 714 g 502 t ORIGIN 1 ggctggtgca aggagccaca gtgggctgcc tggggggctg atgccaccat tccaggagcc 61 tcggtgaaga gaggatatcc atctgtgtag ccgcttctct atacgggatt ccagctccat 121 ggcagcccgt ctgctcctcc tgggcatcct tctcctgctg ctgcccctgc ccgtccctgc 181 cccgtgccac acagccgcac gctcagagtg caagcgcagc cacaagttcg tgcctggtgc 241 atggctggcc ggggagggtg tggacgtgac cagcctccgc cgctcgggct ccttcccagt 301 ggacacacaa aggttcctgc ggcccgacgg cacctgcacc ctctgtgaaa atgccctaca 361 ggagggcacc ctccagcgcc tgcctctggc gctcaccaac tggcgggccc agggctctgg 421 ctgccagcgc catgtaacca gggccaaagt cagctccact gaagctgtgg cccgggatgc 481 ggctcgtagc atccgcaacg actggaaggt cgggctggac gtgactccta agcccaccag 541 caatgtgcat gtgtctgtgg ccggctcaca ctcacaggca gccaactttg cagcccagaa 601 gacccaccag gaccagtaca gcttcagcac tgacacggtg gagtgccgct tctacagttt 661 ccatgtggta cacactcccc cgctgcaccc tgacttcaag agggccctcg gggacctgcc 721 ccaccacttc aacgcctcca cccagcccgc ctacctcagg cttatctcca actacggcac 781 ccacttcatc cgggctgtgg agctgggtgg ccgcatatcg gccctcactg ccctgcgcac 841 ctgcgagctg gccctggaag ggctcacgga caacgaggtg gaggactgcc tgactgtcga 901 ggcccaggtc aacataggca tccacggcag catctctgcc gaagccaagg cctgtgagga 961 gaagaagaag aagcacaaga tgacggcctc cttccaccaa acctaccggg agcgccattc 1021 ggaagtggtt ggcggccatc acacctccat taacgacctg ctgttcggga tccaggccgg 1081 gcccgagcag tactcagcct gggtaaactc gctgcccggc agccctggcc tggtggacta 1141 caccctggaa cccctgcacg tgctgctgga cagccaggac ccgcggcggg aggcactgag 1201 gagggccctg agtcagtacc tgacggacag ggctcgctgg agggactgca gccggccgtg 1261 cccaccaggg cggcagaaga gcccccgaga cccatgccag tgtgtgtgcc atggctcagc 1321 ggtcaccacc caggactgct gccctcggca gaggggcctg gcccagctgg aggtgacctt 1381 catccaagca tggggcctgt ggggggactg gttcactgcc acggatgcct atgtgaagct 1441 cttctttggt ggccaggagc tgaggacgag caccgtgtgg gacaataaca accccatctg 1501 gtcagtgcgg ctggattttg gggatgtgct cctggccaca ggggggcccc tgaggttgca 1561 ggtctgggat caggactctg gcagggacga tgacctcctt ggcacctgtg atcaggctcc 1621 caagtctggt tcccatgagg tgagatgcaa cctgaatcat ggccacctaa aattccgcta 1681 tcatgccagg tgcttgcccc acctgggagg aggcacctgc ctggactatg tcccccaaat 1741 gcttctgggg gagcctccag gaaaccggag tggggccgtg tggtgagaac agtgagcttg 1801 gaaaggacca gtatgcttgg actgaagggg ttctcacagt gggagccagg gctgtcttcg 1861 tattcccatt agaccaagct tatccaaccc gaggcccgca tgcggcccag gatggctttg 1921 aatgcggccc aacgcaaatt cgcaaacttt cttaaaacat tatgagtttc tttttgctat 1981 tttttttttt ttttttagct catcggctat cgttagtgct agtggatttt acatgtggcc 2041 caacacaatt cttcttccaa cgtggcccag agaagccaaa agattggata cgcatcagac 2101 agatggaaaa gggagattca gactgttttt cagggaggtg gctgggttta cacgctaatc 2161 ccgattcacc ctgtccaaac tgcctaagcc ctccgccatt ctcaagccct gcagtcacag 2221 ctacacagat cacagcttca gccaggagct gggcagaagg ccaagaggct gttcccacca 2281 ggctgctcag ggctggtctt ttaggaccct tcccttgagc cctctatggt gtggcaaagc 2341 cttcattgcc ttaactggag ccccatcagc tccagctgct ctgtcttctt tgcccacaat 2401 gctttgcccc tgagacaaat ggaggcctgt cctgacctgt ctcaccatgt acatagcttg 2461 ataaagggcc aataaatatg atgttatggt gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2521 aaaaaaaaaa aaaa //