LOCUS BC063043 2534 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens perforin 1 (pore forming protein), mRNA (cDNA clone
MGC:65093 IMAGE:5748582), complete cds.
ACCESSION BC063043
VERSION BC063043.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2534)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2534)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45935369.
FEATURES Location/Qualifiers
source 1..2534
/db_xref="H-InvDB:HIT000260750"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:65093 IMAGE:5748582"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2534
/gene="PRF1"
/gene_synonym="FLH2"
/gene_synonym="HPLH2"
/gene_synonym="MGC65093"
/gene_synonym="P1"
/gene_synonym="PFP"
/db_xref="GeneID:5551"
/db_xref="HGNC:HGNC:9360"
/db_xref="MIM:170280"
CDS 119..1786
/gene="PRF1"
/gene_synonym="FLH2"
/gene_synonym="HPLH2"
/gene_synonym="MGC65093"
/gene_synonym="P1"
/gene_synonym="PFP"
/codon_start=1
/product="perforin 1 (pore forming protein)"
/protein_id="AAH63043.1"
/db_xref="GeneID:5551"
/db_xref="HGNC:HGNC:9360"
/db_xref="MIM:170280"
/translation="MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLA
GEGVDVTSLRRSGSFPVDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGC
QRHVTRAKVSSTEAVARDAARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQ
KTHQDQYSFSTDTVECRFYSFHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISN
YGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEA
KACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPG
SPGLVDYTLEPLHVLLDSQDPRREALRRALSQYLTDRARWRDCSRPCPPGRQKSPRDP
CQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRT
STVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEV
RCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQMLLGEPPGNRSGAVW"
BASE COUNT 544 a 774 c 714 g 502 t
ORIGIN
1 ggctggtgca aggagccaca gtgggctgcc tggggggctg atgccaccat tccaggagcc
61 tcggtgaaga gaggatatcc atctgtgtag ccgcttctct atacgggatt ccagctccat
121 ggcagcccgt ctgctcctcc tgggcatcct tctcctgctg ctgcccctgc ccgtccctgc
181 cccgtgccac acagccgcac gctcagagtg caagcgcagc cacaagttcg tgcctggtgc
241 atggctggcc ggggagggtg tggacgtgac cagcctccgc cgctcgggct ccttcccagt
301 ggacacacaa aggttcctgc ggcccgacgg cacctgcacc ctctgtgaaa atgccctaca
361 ggagggcacc ctccagcgcc tgcctctggc gctcaccaac tggcgggccc agggctctgg
421 ctgccagcgc catgtaacca gggccaaagt cagctccact gaagctgtgg cccgggatgc
481 ggctcgtagc atccgcaacg actggaaggt cgggctggac gtgactccta agcccaccag
541 caatgtgcat gtgtctgtgg ccggctcaca ctcacaggca gccaactttg cagcccagaa
601 gacccaccag gaccagtaca gcttcagcac tgacacggtg gagtgccgct tctacagttt
661 ccatgtggta cacactcccc cgctgcaccc tgacttcaag agggccctcg gggacctgcc
721 ccaccacttc aacgcctcca cccagcccgc ctacctcagg cttatctcca actacggcac
781 ccacttcatc cgggctgtgg agctgggtgg ccgcatatcg gccctcactg ccctgcgcac
841 ctgcgagctg gccctggaag ggctcacgga caacgaggtg gaggactgcc tgactgtcga
901 ggcccaggtc aacataggca tccacggcag catctctgcc gaagccaagg cctgtgagga
961 gaagaagaag aagcacaaga tgacggcctc cttccaccaa acctaccggg agcgccattc
1021 ggaagtggtt ggcggccatc acacctccat taacgacctg ctgttcggga tccaggccgg
1081 gcccgagcag tactcagcct gggtaaactc gctgcccggc agccctggcc tggtggacta
1141 caccctggaa cccctgcacg tgctgctgga cagccaggac ccgcggcggg aggcactgag
1201 gagggccctg agtcagtacc tgacggacag ggctcgctgg agggactgca gccggccgtg
1261 cccaccaggg cggcagaaga gcccccgaga cccatgccag tgtgtgtgcc atggctcagc
1321 ggtcaccacc caggactgct gccctcggca gaggggcctg gcccagctgg aggtgacctt
1381 catccaagca tggggcctgt ggggggactg gttcactgcc acggatgcct atgtgaagct
1441 cttctttggt ggccaggagc tgaggacgag caccgtgtgg gacaataaca accccatctg
1501 gtcagtgcgg ctggattttg gggatgtgct cctggccaca ggggggcccc tgaggttgca
1561 ggtctgggat caggactctg gcagggacga tgacctcctt ggcacctgtg atcaggctcc
1621 caagtctggt tcccatgagg tgagatgcaa cctgaatcat ggccacctaa aattccgcta
1681 tcatgccagg tgcttgcccc acctgggagg aggcacctgc ctggactatg tcccccaaat
1741 gcttctgggg gagcctccag gaaaccggag tggggccgtg tggtgagaac agtgagcttg
1801 gaaaggacca gtatgcttgg actgaagggg ttctcacagt gggagccagg gctgtcttcg
1861 tattcccatt agaccaagct tatccaaccc gaggcccgca tgcggcccag gatggctttg
1921 aatgcggccc aacgcaaatt cgcaaacttt cttaaaacat tatgagtttc tttttgctat
1981 tttttttttt ttttttagct catcggctat cgttagtgct agtggatttt acatgtggcc
2041 caacacaatt cttcttccaa cgtggcccag agaagccaaa agattggata cgcatcagac
2101 agatggaaaa gggagattca gactgttttt cagggaggtg gctgggttta cacgctaatc
2161 ccgattcacc ctgtccaaac tgcctaagcc ctccgccatt ctcaagccct gcagtcacag
2221 ctacacagat cacagcttca gccaggagct gggcagaagg ccaagaggct gttcccacca
2281 ggctgctcag ggctggtctt ttaggaccct tcccttgagc cctctatggt gtggcaaagc
2341 cttcattgcc ttaactggag ccccatcagc tccagctgct ctgtcttctt tgcccacaat
2401 gctttgcccc tgagacaaat ggaggcctgt cctgacctgt ctcaccatgt acatagcttg
2461 ataaagggcc aataaatatg atgttatggt gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2521 aaaaaaaaaa aaaa
//