LOCUS BC062991 1167 bp mRNA linear HUM 23-DEC-2003 DEFINITION Homo sapiens major histocompatibility complex, class I, F, mRNA (cDNA clone MGC:74962 IMAGE:5496696), complete cds. ACCESSION BC062991 VERSION BC062991.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1167) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1167) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 135 Row: o Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 9665231. FEATURES Location/Qualifiers source 1..1167 /db_xref="H-InvDB:HIT000260701_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:74962 IMAGE:5496696" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1167 /gene="HLA-F" /gene_synonym="HLA-5.4" /gene_synonym="HLA-CDA12" /gene_synonym="HLAF" /db_xref="GeneID:3134" /db_xref="MIM:143110" CDS 5..1045 /gene="HLA-F" /gene_synonym="HLA-5.4" /gene_synonym="HLA-CDA12" /gene_synonym="HLAF" /codon_start=1 /product="HLA-F protein" /protein_id="AAH62991.1" /db_xref="GeneID:3134" /db_xref="MIM:143110" /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYI AVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNL LRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTV AQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDH EATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQ RYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSS DRNRGSYSQAAV" misc_feature 68..604 /gene="HLA-F" /gene_synonym="HLA-5.4" /gene_synonym="HLA-CDA12" /gene_synonym="HLAF" /note="MHC_I; Region: Class I Histocompatibility antigen, domains alpha 1 and 2" /db_xref="CDD:pfam00129" misc_feature 617..892 /gene="HLA-F" /gene_synonym="HLA-5.4" /gene_synonym="HLA-CDA12" /gene_synonym="HLAF" /note="IGc; Region: Immunoglobulin domain constant region subfamily" /db_xref="CDD:cd00098" BASE COUNT 272 a 331 c 363 g 201 t ORIGIN 1 ggtcatggcg ccccgaagcc tcctcctgct gctctcaggg gccctggccc tgaccgatac 61 ttgggcaggc tcccactcct tgaggtattt cagcaccgct gtgtcgcggc ccggccgcgg 121 ggagccccgc tacatcgccg tggagtacgt agacgacacg caattcctgc ggttcgacag 181 cgacgccgcg attccgagga tggagccgcg ggagccgtgg gtggagcaag aggggccgca 241 gtattgggag tggaccacag ggtacgccaa ggccaacgca cagactgacc gagtggccct 301 gaggaacctg ctccgccgct acaaccagag cgaggctggg tctcacaccc tccagggaat 361 gaatggctgc gacatggggc ccgacggacg cctcctccgc gggtatcacc agcacgcgta 421 cgacggcaag gattacatct ccctgaacga ggacctgcgc tcctggaccg cggcggacac 481 cgtggctcag atcacccagc gcttctatga ggcagaggaa tatgcagagg agttcaggac 541 ctacctggag ggcgagtgcc tggagttgct ccgcagatac ttggagaatg ggaaggagac 601 gctacagcgc gcagatcctc caaaggcaca cgttgcccac caccccatct ctgaccatga 661 ggccaccctg aggtgctggg ccctgggctt ctaccctgcg gagatcacgc tgacctggca 721 gcgggatggg gaggaacaga cccaggacac agagcttgtg gagaccaggc ctgcagggga 781 tggaaccttc cagaagtggg ccgctgtggt ggtgccttct ggagaggaac agagatacac 841 atgccatgtg cagcacgagg ggctgcccca gcccctcatc ctgagatggg agcagtctcc 901 ccagcccacc atccccatcg tgggcatcgt tgctggcctt gttgtccttg gagctgtggt 961 cactggagct gtggtcgctg ctgtgatgtg gaggaagaag agctcagata gaaacagagg 1021 gagctactct caggctgcag tgtgagacag cttccttgtg tgggactgag aagcaagata 1081 tcaatgtagc agaattgcac ttgtgcctca cgaacataca taaattttaa aaataaagaa 1141 taaaaatata aaaaaaaaaa aaaaaaa //