LOCUS BC062991 1167 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens major histocompatibility complex, class I, F, mRNA
(cDNA clone MGC:74962 IMAGE:5496696), complete cds.
ACCESSION BC062991
VERSION BC062991.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1167)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1167)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: o Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9665231.
FEATURES Location/Qualifiers
source 1..1167
/db_xref="H-InvDB:HIT000260701_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74962 IMAGE:5496696"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1167
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/db_xref="GeneID:3134"
/db_xref="MIM:143110"
CDS 5..1045
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/codon_start=1
/product="HLA-F protein"
/protein_id="AAH62991.1"
/db_xref="GeneID:3134"
/db_xref="MIM:143110"
/translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYI
AVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNL
LRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTV
AQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDH
EATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQ
RYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSS
DRNRGSYSQAAV"
misc_feature 68..604
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/note="MHC_I; Region: Class I Histocompatibility antigen,
domains alpha 1 and 2"
/db_xref="CDD:pfam00129"
misc_feature 617..892
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/note="IGc; Region: Immunoglobulin domain constant region
subfamily"
/db_xref="CDD:cd00098"
BASE COUNT 272 a 331 c 363 g 201 t
ORIGIN
1 ggtcatggcg ccccgaagcc tcctcctgct gctctcaggg gccctggccc tgaccgatac
61 ttgggcaggc tcccactcct tgaggtattt cagcaccgct gtgtcgcggc ccggccgcgg
121 ggagccccgc tacatcgccg tggagtacgt agacgacacg caattcctgc ggttcgacag
181 cgacgccgcg attccgagga tggagccgcg ggagccgtgg gtggagcaag aggggccgca
241 gtattgggag tggaccacag ggtacgccaa ggccaacgca cagactgacc gagtggccct
301 gaggaacctg ctccgccgct acaaccagag cgaggctggg tctcacaccc tccagggaat
361 gaatggctgc gacatggggc ccgacggacg cctcctccgc gggtatcacc agcacgcgta
421 cgacggcaag gattacatct ccctgaacga ggacctgcgc tcctggaccg cggcggacac
481 cgtggctcag atcacccagc gcttctatga ggcagaggaa tatgcagagg agttcaggac
541 ctacctggag ggcgagtgcc tggagttgct ccgcagatac ttggagaatg ggaaggagac
601 gctacagcgc gcagatcctc caaaggcaca cgttgcccac caccccatct ctgaccatga
661 ggccaccctg aggtgctggg ccctgggctt ctaccctgcg gagatcacgc tgacctggca
721 gcgggatggg gaggaacaga cccaggacac agagcttgtg gagaccaggc ctgcagggga
781 tggaaccttc cagaagtggg ccgctgtggt ggtgccttct ggagaggaac agagatacac
841 atgccatgtg cagcacgagg ggctgcccca gcccctcatc ctgagatggg agcagtctcc
901 ccagcccacc atccccatcg tgggcatcgt tgctggcctt gttgtccttg gagctgtggt
961 cactggagct gtggtcgctg ctgtgatgtg gaggaagaag agctcagata gaaacagagg
1021 gagctactct caggctgcag tgtgagacag cttccttgtg tgggactgag aagcaagata
1081 tcaatgtagc agaattgcac ttgtgcctca cgaacataca taaattttaa aaataaagaa
1141 taaaaatata aaaaaaaaaa aaaaaaa
//