LOCUS BC062472 1448 bp mRNA linear HUM 03-JAN-2005 DEFINITION Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 9, mRNA (cDNA clone IMAGE:30407790), complete cds. ACCESSION BC062472 VERSION BC062472.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1448) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1448) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Michael Brownstein cDNA Library Preparation: Invitrogen Corp cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 141 Row: p Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27477114 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1448 /db_xref="H-InvDB:HIT000260435" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:30407790" /tissue_type="White Matter pool- 5 brain tissues- femoral artery, olfactory tract, optic tract, cerebellar white matter, cerebral white matter." /clone_lib="NIH_MGC_181" /lab_host="DH10B" /note="Vector: pCMV-SPORT6.1" gene 1..1448 /gene="ABCA9" /gene_synonym="EST640918" /db_xref="GeneID:10350" CDS 370..858 /gene="ABCA9" /gene_synonym="EST640918" /codon_start=1 /product="ABCA9 protein" /protein_id="AAH62472.1" /db_xref="GeneID:10350" /translation="MGWPDEKSMDELDLNYSIDAVRVIFTDTFSYHLKFSWGHRIPMM KEHRDHSAHCQAVNEKMKCEGSEFWEKGFVAFQAAINAAIIEIATNHSVMEQLMSVTG VHMKILPFVAQGGVATDFFIFFCIISFSTFIYYVSVNVTQERQYITSLMTMMGLRESA FW" BASE COUNT 454 a 293 c 286 g 415 t ORIGIN 1 atgaactgtg tttctagatt tttcctccag ctttcctgag agaaacaggt caaaatgagc 61 aagagacgca tgagcgtggg tcagcaaaca tgggctcttc tctgcaagaa ctgtctcaaa 121 aaatggagaa tgaaaagaca gaccttgttg gaatggctct tttcatttct tctggtactg 181 tttctgtacc tatttttctc caatttacat caagttcatg acactcctca aatgtcttca 241 atggatctgg gacgtgtaga tagttttaat gatactaatt atgttattgc atttgcacct 301 gaatccaaaa ctacccaaga gataatgaac aaagtggctt cagccccatt cctaaaagga 361 agaacaatca tggggtggcc tgatgaaaaa agcatggatg aattggattt gaactattca 421 atagacgcag tgagagtcat ctttactgat accttctcct accatttgaa gttttcttgg 481 ggacatagaa tccccatgat gaaagagcac agagaccatt cagctcactg tcaagcagtg 541 aatgaaaaaa tgaagtgtga aggttcagag ttctgggaga aaggctttgt agcttttcaa 601 gctgccatta atgctgctat catagaaatc gcaacaaatc attcagtgat ggaacagctg 661 atgtcagtta ctggtgtaca tatgaagata ttaccttttg ttgcccaagg aggagttgca 721 actgattttt tcattttctt ttgcattatt tctttttcta catttatata ctatgtatca 781 gtcaatgtta cacaagaaag acaatacatt acgtcattga tgacaatgat gggactccga 841 gagtcagcat tctggtaaat catatgactc caatccatta tacagcataa acaaacagaa 901 caacttagct ggttgactcc ttagaccagg ggtccccaag ccccaggcca cagactgcta 961 ctggtccatg gccagttagg taccaggcca catagcagga ggtgagtggc aggcaagtga 1021 gcaaagcttc atgtatattt acagccactc cctattgctc acattaccac ctgagctcca 1081 cctcctgtca gaatagccac gttattagag tatcacagaa gctcaaactc tattgtgaac 1141 tgtgtatgtg agagatctag gttgcgggct ccttatgagt atccaatgcc tgatgatctg 1201 tcactcaaga gatctaggtt gcgggctctt tatgagtatc caatgcctga tgatctgtca 1261 ctgtctccca tcacccccag atgggatcta gttgcaggaa aacaagctca gggttcctac 1321 tgattctaca ttatggtaag ttgtataatt atttcattat atattacaat gtaataataa 1381 tagaaataaa gtgcacaata aatgtaatcc acatgcatca tcccaaaaaa aaaaaaaaaa 1441 aaaaaaaa //