LOCUS BC062472 1448 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 9,
mRNA (cDNA clone IMAGE:30407790), complete cds.
ACCESSION BC062472
VERSION BC062472.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1448)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1448)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: p Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27477114
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1448
/db_xref="H-InvDB:HIT000260435"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30407790"
/tissue_type="White Matter pool- 5 brain tissues- femoral
artery, olfactory tract, optic tract, cerebellar white
matter, cerebral white matter."
/clone_lib="NIH_MGC_181"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1448
/gene="ABCA9"
/gene_synonym="EST640918"
/db_xref="GeneID:10350"
CDS 370..858
/gene="ABCA9"
/gene_synonym="EST640918"
/codon_start=1
/product="ABCA9 protein"
/protein_id="AAH62472.1"
/db_xref="GeneID:10350"
/translation="MGWPDEKSMDELDLNYSIDAVRVIFTDTFSYHLKFSWGHRIPMM
KEHRDHSAHCQAVNEKMKCEGSEFWEKGFVAFQAAINAAIIEIATNHSVMEQLMSVTG
VHMKILPFVAQGGVATDFFIFFCIISFSTFIYYVSVNVTQERQYITSLMTMMGLRESA
FW"
BASE COUNT 454 a 293 c 286 g 415 t
ORIGIN
1 atgaactgtg tttctagatt tttcctccag ctttcctgag agaaacaggt caaaatgagc
61 aagagacgca tgagcgtggg tcagcaaaca tgggctcttc tctgcaagaa ctgtctcaaa
121 aaatggagaa tgaaaagaca gaccttgttg gaatggctct tttcatttct tctggtactg
181 tttctgtacc tatttttctc caatttacat caagttcatg acactcctca aatgtcttca
241 atggatctgg gacgtgtaga tagttttaat gatactaatt atgttattgc atttgcacct
301 gaatccaaaa ctacccaaga gataatgaac aaagtggctt cagccccatt cctaaaagga
361 agaacaatca tggggtggcc tgatgaaaaa agcatggatg aattggattt gaactattca
421 atagacgcag tgagagtcat ctttactgat accttctcct accatttgaa gttttcttgg
481 ggacatagaa tccccatgat gaaagagcac agagaccatt cagctcactg tcaagcagtg
541 aatgaaaaaa tgaagtgtga aggttcagag ttctgggaga aaggctttgt agcttttcaa
601 gctgccatta atgctgctat catagaaatc gcaacaaatc attcagtgat ggaacagctg
661 atgtcagtta ctggtgtaca tatgaagata ttaccttttg ttgcccaagg aggagttgca
721 actgattttt tcattttctt ttgcattatt tctttttcta catttatata ctatgtatca
781 gtcaatgtta cacaagaaag acaatacatt acgtcattga tgacaatgat gggactccga
841 gagtcagcat tctggtaaat catatgactc caatccatta tacagcataa acaaacagaa
901 caacttagct ggttgactcc ttagaccagg ggtccccaag ccccaggcca cagactgcta
961 ctggtccatg gccagttagg taccaggcca catagcagga ggtgagtggc aggcaagtga
1021 gcaaagcttc atgtatattt acagccactc cctattgctc acattaccac ctgagctcca
1081 cctcctgtca gaatagccac gttattagag tatcacagaa gctcaaactc tattgtgaac
1141 tgtgtatgtg agagatctag gttgcgggct ccttatgagt atccaatgcc tgatgatctg
1201 tcactcaaga gatctaggtt gcgggctctt tatgagtatc caatgcctga tgatctgtca
1261 ctgtctccca tcacccccag atgggatcta gttgcaggaa aacaagctca gggttcctac
1321 tgattctaca ttatggtaag ttgtataatt atttcattat atattacaat gtaataataa
1381 tagaaataaa gtgcacaata aatgtaatcc acatgcatca tcccaaaaaa aaaaaaaaaa
1441 aaaaaaaa
//