LOCUS BC060789 3053 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens collectin sub-family member 12, mRNA (cDNA clone MGC:71579 IMAGE:30344546), complete cds. ACCESSION BC060789 VERSION BC060789.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3053) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3053) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 133 Row: h Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18641357. FEATURES Location/Qualifiers source 1..3053 /db_xref="H-InvDB:HIT000260091" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71579 IMAGE:30344546" /tissue_type="Placenta, normal" /clone_lib="NIH_MGC_147" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3053 /gene="COLEC12" /gene_synonym="CLP1" /gene_synonym="NSR2" /gene_synonym="SCARA4" /gene_synonym="SRCL" /db_xref="GeneID:81035" /db_xref="HGNC:HGNC:16016" /db_xref="MIM:607621" CDS 188..2416 /gene="COLEC12" /gene_synonym="CLP1" /gene_synonym="NSR2" /gene_synonym="SCARA4" /gene_synonym="SRCL" /codon_start=1 /product="collectin sub-family member 12" /protein_id="AAH60789.1" /db_xref="GeneID:81035" /db_xref="HGNC:HGNC:16016" /db_xref="MIM:607621" /translation="MKDDFAEEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLY ILCALLTITVAILGYKVVEKMDNVTGGMETSRQTYDDKLTAVESDLEKLGDQTGKKAI STNSELSTFRSDILDLRQQLREITEKTSKNKDTLEKLQASGDALVDRQSQLKETLENN SFLITTVNKTLQAYNGYVTNLQQDTSVLQGNLQNQMYSHNVVIMNLNNLNLTQVQQRN LITNLQRSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALA KANNDTLEDMNSQLNSFTGQMENITTISQANEQNLKDLQDLHKDAENRTAIKFNQLEE RFQLFETDIVNIISNISYTAHHLRTLTSNLNEVRTTCTDTLTKHTDDLTSLNNTLANI RLDSVSLRMQQDLMRSRLDTEVANLSVIMEEMKLVDSKHGQLIKNFTILQGPPGPRGP RGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPK GSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPGPRGLPG LPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDNSCPPHWKNFTDKCYYFSVE KEIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENEWKWLDG TSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYAGQWNDFQCEDVNNFICEKDRETVLSS AL" BASE COUNT 918 a 735 c 757 g 643 t ORIGIN 1 agcagagcgc ggagccggga gcgcggggag cgcgggccgg cggcggcgag ggaggacggg 61 ggcgcagacg gccggcgcgc ggcgcggcta ccatgggcgt gcggtgagca gccgctcggg 121 acgacttcct cggctgcgcg gcgctcgcgc ggagctcccc ggccggcggt gcgtccccac 181 ggtcaccatg aaagacgact tcgcagagga ggaggaggtg caatccttcg gttacaagcg 241 gtttggtatt caggaaggaa cacaatgtac caaatgtaaa aataactggg cactgaagtt 301 ttctatcata ttattataca ttttgtgtgc cttgctaaca atcacagtag ccattttggg 361 atataaagtt gtagagaaaa tggacaatgt cacaggtggc atggaaacat ctcgccaaac 421 ctatgatgac aagctcacag cagtggaaag tgacctggaa aaattaggtg accaaactgg 481 gaagaaagct atcagcacca actcagaact ctccaccttc agatcagaca ttctagatct 541 ccgtcagcaa cttcgtgaga ttacagaaaa aaccagcaag aacaaggata cgctggagaa 601 gttacaggcg agcggggatg ctctggtgga caggcagagt caattgaaag aaactttgga 661 gaataactct ttcctcatca ccactgtaaa caaaaccctc caggcgtata atggctatgt 721 cacgaatctg cagcaagata ccagcgtgct ccagggcaat ctgcagaacc aaatgtattc 781 tcataatgtg gtcatcatga acctcaacaa cctgaacctg acccaggtgc agcagaggaa 841 cctcatcacg aatctgcagc ggtctgtgga tgacacaagc caggctatcc agcgaatcaa 901 gaacgacttt caaaatctgc agcaggtttt tcttcaagcc aagaaggaca cggattggct 961 gaaggagaaa gtgcagagct tgcagacgct ggctgccaac aactctgcgt tggccaaagc 1021 caacaacgac accctggagg atatgaacag ccagctcaac tcattcacag gtcagatgga 1081 gaacatcacc actatctctc aagccaacga gcagaacctg aaagacctgc aggacttaca 1141 caaagatgca gagaatagaa cagccatcaa gttcaaccaa ctggaggaac gcttccagct 1201 ctttgagacg gatattgtga acatcattag caatatcagt tacacagccc accacctgcg 1261 gacgctgacc agcaatctaa atgaagtcag gaccacttgc acagataccc ttaccaaaca 1321 cacagatgat ctgacctcct tgaataatac cctggccaac atccgtttgg attctgtttc 1381 tctcaggatg caacaagatt tgatgaggtc gaggttagac actgaagtag ccaacttatc 1441 agtgattatg gaagaaatga agctagtaga ctccaagcat ggtcagctca tcaagaattt 1501 tacaatacta caaggtccac cgggccccag gggtccaaga ggtgacagag gatcccaggg 1561 accccctggc ccaactggca acaagggaca gaaaggagag aagggggagc ctggaccacc 1621 tggccctgcg ggtgagagag gcccaattgg accagctggt ccccccggag agcgtggcgg 1681 caaaggatct aaaggctccc agggccccaa aggctcccgt ggttcccctg ggaagcccgg 1741 ccctcagggc cccagtgggg acccaggccc cccgggccca ccaggcaaag agggactccc 1801 cggccctcag ggccctcctg gcttccaggg acttcagggc accgttgggg agcctggggt 1861 gcctggacct cggggactgc caggcttgcc tggggtacca ggcatgccag gccccaaggg 1921 cccccccggc cctcctggcc catcaggagc ggtggtgccc ctggccctgc agaatgagcc 1981 aaccccggca ccggaggaca atagctgccc gcctcactgg aagaacttca cagacaaatg 2041 ctactatttt tcagttgaga aagaaatttt tgaggatgca aagcttttct gtgaagacaa 2101 gtcttcacat cttgttttca taaacactag agaggaacag caatggataa aaaaacagat 2161 ggtagggaga gagagccact ggatcggcct cacagactca gagcgtgaaa atgaatggaa 2221 gtggctggat gggacatctc cagactacaa aaattggaaa gctggacagc cggataactg 2281 gggtcatggc catgggccag gagaagactg tgctgggttg atttatgctg ggcagtggaa 2341 cgatttccaa tgtgaagacg tcaataactt catttgcgaa aaagacaggg agacagtact 2401 gtcatctgca ttataacgga ctgtgatggg atcacatgag caaattttca gctctcaaag 2461 gcaaaggaca ctcctttcta attgcatcac cttctcatca gattgaaaaa aaaaaagcac 2521 tgaaaaccaa ttactgaaaa aaaattgaca gctagtgttt tttaccatcc gtcattaccc 2581 aaagacttgg gaactaaaat gttccccagg gtgatatgct gattttcatt gtgcacatgg 2641 actgaatcac atagattctc ctccgtcagt aaccgtgcga ttatacaaat tatgtcttcc 2701 aaagtatgga acactccaat cagaaaaagg ttatcattgg tcgttgagtt atgggaagaa 2761 cttaagcata tactgtgtaa acagtgccat acatttctaa aatcccaagt gtaggaaaaa 2821 tatgcagaca tacagatata taggccaact attagtaata atatgaaata tacttaaaga 2881 gcttttaaaa ctttgtattt ttgtacaaaa tatttgtctt ttacaatttt tttccttttt 2941 tttttttttg tcattttacc gacataatac atggagccaa agaaaacaat aatggtacta 3001 ataaaaactc ctagggtttc ctgtcagatt taattctaaa aaaaaaaaaa aaa //