LOCUS BC060789 3053 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens collectin sub-family member 12, mRNA (cDNA clone
MGC:71579 IMAGE:30344546), complete cds.
ACCESSION BC060789
VERSION BC060789.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3053)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3053)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: h Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641357.
FEATURES Location/Qualifiers
source 1..3053
/db_xref="H-InvDB:HIT000260091"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71579 IMAGE:30344546"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3053
/gene="COLEC12"
/gene_synonym="CLP1"
/gene_synonym="NSR2"
/gene_synonym="SCARA4"
/gene_synonym="SRCL"
/db_xref="GeneID:81035"
/db_xref="HGNC:HGNC:16016"
/db_xref="MIM:607621"
CDS 188..2416
/gene="COLEC12"
/gene_synonym="CLP1"
/gene_synonym="NSR2"
/gene_synonym="SCARA4"
/gene_synonym="SRCL"
/codon_start=1
/product="collectin sub-family member 12"
/protein_id="AAH60789.1"
/db_xref="GeneID:81035"
/db_xref="HGNC:HGNC:16016"
/db_xref="MIM:607621"
/translation="MKDDFAEEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLY
ILCALLTITVAILGYKVVEKMDNVTGGMETSRQTYDDKLTAVESDLEKLGDQTGKKAI
STNSELSTFRSDILDLRQQLREITEKTSKNKDTLEKLQASGDALVDRQSQLKETLENN
SFLITTVNKTLQAYNGYVTNLQQDTSVLQGNLQNQMYSHNVVIMNLNNLNLTQVQQRN
LITNLQRSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALA
KANNDTLEDMNSQLNSFTGQMENITTISQANEQNLKDLQDLHKDAENRTAIKFNQLEE
RFQLFETDIVNIISNISYTAHHLRTLTSNLNEVRTTCTDTLTKHTDDLTSLNNTLANI
RLDSVSLRMQQDLMRSRLDTEVANLSVIMEEMKLVDSKHGQLIKNFTILQGPPGPRGP
RGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPK
GSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPGPRGLPG
LPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDNSCPPHWKNFTDKCYYFSVE
KEIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENEWKWLDG
TSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYAGQWNDFQCEDVNNFICEKDRETVLSS
AL"
BASE COUNT 918 a 735 c 757 g 643 t
ORIGIN
1 agcagagcgc ggagccggga gcgcggggag cgcgggccgg cggcggcgag ggaggacggg
61 ggcgcagacg gccggcgcgc ggcgcggcta ccatgggcgt gcggtgagca gccgctcggg
121 acgacttcct cggctgcgcg gcgctcgcgc ggagctcccc ggccggcggt gcgtccccac
181 ggtcaccatg aaagacgact tcgcagagga ggaggaggtg caatccttcg gttacaagcg
241 gtttggtatt caggaaggaa cacaatgtac caaatgtaaa aataactggg cactgaagtt
301 ttctatcata ttattataca ttttgtgtgc cttgctaaca atcacagtag ccattttggg
361 atataaagtt gtagagaaaa tggacaatgt cacaggtggc atggaaacat ctcgccaaac
421 ctatgatgac aagctcacag cagtggaaag tgacctggaa aaattaggtg accaaactgg
481 gaagaaagct atcagcacca actcagaact ctccaccttc agatcagaca ttctagatct
541 ccgtcagcaa cttcgtgaga ttacagaaaa aaccagcaag aacaaggata cgctggagaa
601 gttacaggcg agcggggatg ctctggtgga caggcagagt caattgaaag aaactttgga
661 gaataactct ttcctcatca ccactgtaaa caaaaccctc caggcgtata atggctatgt
721 cacgaatctg cagcaagata ccagcgtgct ccagggcaat ctgcagaacc aaatgtattc
781 tcataatgtg gtcatcatga acctcaacaa cctgaacctg acccaggtgc agcagaggaa
841 cctcatcacg aatctgcagc ggtctgtgga tgacacaagc caggctatcc agcgaatcaa
901 gaacgacttt caaaatctgc agcaggtttt tcttcaagcc aagaaggaca cggattggct
961 gaaggagaaa gtgcagagct tgcagacgct ggctgccaac aactctgcgt tggccaaagc
1021 caacaacgac accctggagg atatgaacag ccagctcaac tcattcacag gtcagatgga
1081 gaacatcacc actatctctc aagccaacga gcagaacctg aaagacctgc aggacttaca
1141 caaagatgca gagaatagaa cagccatcaa gttcaaccaa ctggaggaac gcttccagct
1201 ctttgagacg gatattgtga acatcattag caatatcagt tacacagccc accacctgcg
1261 gacgctgacc agcaatctaa atgaagtcag gaccacttgc acagataccc ttaccaaaca
1321 cacagatgat ctgacctcct tgaataatac cctggccaac atccgtttgg attctgtttc
1381 tctcaggatg caacaagatt tgatgaggtc gaggttagac actgaagtag ccaacttatc
1441 agtgattatg gaagaaatga agctagtaga ctccaagcat ggtcagctca tcaagaattt
1501 tacaatacta caaggtccac cgggccccag gggtccaaga ggtgacagag gatcccaggg
1561 accccctggc ccaactggca acaagggaca gaaaggagag aagggggagc ctggaccacc
1621 tggccctgcg ggtgagagag gcccaattgg accagctggt ccccccggag agcgtggcgg
1681 caaaggatct aaaggctccc agggccccaa aggctcccgt ggttcccctg ggaagcccgg
1741 ccctcagggc cccagtgggg acccaggccc cccgggccca ccaggcaaag agggactccc
1801 cggccctcag ggccctcctg gcttccaggg acttcagggc accgttgggg agcctggggt
1861 gcctggacct cggggactgc caggcttgcc tggggtacca ggcatgccag gccccaaggg
1921 cccccccggc cctcctggcc catcaggagc ggtggtgccc ctggccctgc agaatgagcc
1981 aaccccggca ccggaggaca atagctgccc gcctcactgg aagaacttca cagacaaatg
2041 ctactatttt tcagttgaga aagaaatttt tgaggatgca aagcttttct gtgaagacaa
2101 gtcttcacat cttgttttca taaacactag agaggaacag caatggataa aaaaacagat
2161 ggtagggaga gagagccact ggatcggcct cacagactca gagcgtgaaa atgaatggaa
2221 gtggctggat gggacatctc cagactacaa aaattggaaa gctggacagc cggataactg
2281 gggtcatggc catgggccag gagaagactg tgctgggttg atttatgctg ggcagtggaa
2341 cgatttccaa tgtgaagacg tcaataactt catttgcgaa aaagacaggg agacagtact
2401 gtcatctgca ttataacgga ctgtgatggg atcacatgag caaattttca gctctcaaag
2461 gcaaaggaca ctcctttcta attgcatcac cttctcatca gattgaaaaa aaaaaagcac
2521 tgaaaaccaa ttactgaaaa aaaattgaca gctagtgttt tttaccatcc gtcattaccc
2581 aaagacttgg gaactaaaat gttccccagg gtgatatgct gattttcatt gtgcacatgg
2641 actgaatcac atagattctc ctccgtcagt aaccgtgcga ttatacaaat tatgtcttcc
2701 aaagtatgga acactccaat cagaaaaagg ttatcattgg tcgttgagtt atgggaagaa
2761 cttaagcata tactgtgtaa acagtgccat acatttctaa aatcccaagt gtaggaaaaa
2821 tatgcagaca tacagatata taggccaact attagtaata atatgaaata tacttaaaga
2881 gcttttaaaa ctttgtattt ttgtacaaaa tatttgtctt ttacaatttt tttccttttt
2941 tttttttttg tcattttacc gacataatac atggagccaa agaaaacaat aatggtacta
3001 ataaaaactc ctagggtttc ctgtcagatt taattctaaa aaaaaaaaaa aaa
//