LOCUS BC060772 3982 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase 1, mRNA (cDNA clone MGC:71527 IMAGE:30340553), complete cds. ACCESSION BC060772 VERSION BC060772.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3982) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3982) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 133 Row: e Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40255140 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..3982 /db_xref="H-InvDB:HIT000260074" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71527 IMAGE:30340553" /tissue_type="Placenta, normal" /clone_lib="NIH_MGC_147" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3982 /gene="CSGALNACT1" /gene_synonym="beta4GalNAcT" /gene_synonym="ChGn" /gene_synonym="CSGalNAcT-1" /db_xref="GeneID:55790" /db_xref="HGNC:HGNC:24290" CDS 460..1353 /gene="CSGALNACT1" /gene_synonym="beta4GalNAcT" /gene_synonym="ChGn" /gene_synonym="CSGalNAcT-1" /codon_start=1 /product="CSGALNACT1 protein" /protein_id="AAH60772.1" /db_xref="GeneID:55790" /db_xref="HGNC:HGNC:24290" /translation="MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLA LPRANSPTGKEGYQAVLQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASD AAGLGLDRSPPEKTQADLLAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLE TGLTRHPEEKPVRKDKRDELVEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTER DKGTLYELTFKGDHKHEFKRLILFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKF RQFMQNFRPADEVFRCVPLSP" BASE COUNT 1136 a 838 c 950 g 1058 t ORIGIN 1 tggggcttgt tccgggatcc gcagccttgc tcaggctgtg cattggtgtg gccccgaatt 61 gcacggagct gccttcctat ttcaaggaaa gacgccaagg taattttgac ccagaggagc 121 aatgatgtag ccacctccta accttccctt cttgaacccc caggtcccct cttgctgttg 181 gctgcacatc aggaaggctg tgatgggaat gaaggtgaaa acttggagat ttcacttcag 241 tcattgcttc tgcctgcaag atcatccttt aaaagtagag aagctgctct gtgtggtggt 301 taactccaag aggcagaact cgttctagaa ggaaatggat gcaagcagct ccgggggccc 361 caaacgcatg cttcctgtga tctagcccag ggaagccctt ccgtgggggc cccggctttg 421 agggatgcca ccggttctgg acgcatggct gattcctgaa tgatgatggt tcgccggggg 481 ctgcttgcgt ggatttcccg ggtggtggtt ttgctggtgc tcctctgctg tgctatctct 541 gtcctgtaca tgttggcctg caccccaaaa ggtgacgagg agcagctggc actgcccagg 601 gccaacagcc ccacggggaa ggaggggtac caggccgtcc ttcaggagtg ggaggagcag 661 caccgcaact acgtgagcag cctgaagcgg cagatcgcac agctcaagga ggagctgcag 721 gagaggagtg agcagctcag gaatgggcag taccaagcca gcgatgctgc tggcctgggt 781 ctggacagga gccccccaga gaaaacccag gccgacctcc tggccttcct gcactcgcag 841 gtggacaagg cagaggtgaa tgctggcgtc aagctggcca cagagtatgc agcagtgcct 901 ttcgatagct ttactctaca gaaggtgtac cagctggaga ctggccttac ccgccacccc 961 gaggagaagc ctgtgaggaa ggacaagcgg gatgagttgg tggaagccat tgaatcagcc 1021 ttggagaccc tgaacaatcc tgcagagaac agccccaatc accgtcctta cacggcctct 1081 gatttcatag aagggatcta ccgaacagaa agggacaaag ggacattgta tgagctcacc 1141 ttcaaagggg accacaaaca tgaattcaaa cggctcatct tatttcgacc attcggcccc 1201 atcatgaaag tggaaaatga aaagctcaac atggccaaca cgcttatcaa tgttatcgtg 1261 cctctagcaa aaagggtgga caagttccgg cagttcatgc agaatttcag gcctgctgat 1321 gaagttttta gatgtgtgcc tttaagccct tgattgtgcg gtgttggatc ttagaagctg 1381 tgatggctca gatgcacata ttggctgagg ataaccagct aagtgatttc accagcttgt 1441 tttaaacata gaaaatccta ctgtctaatt ataaatcttg aaagatcaag ctgatttttt 1501 atttcttttt ttttgagatg gagtcttact ctgtcaccca ggctggagtg cagtggcacg 1561 aactctgctc actgcaacct tcacctccca ggttcaggga gatgtgcatt gagcaggatg 1621 ggagagtcca tctcactgtt gtttactttg ggaaagaaga aataaatgaa gtcaaaggaa 1681 tacttgaaaa cacttccaaa gctgccaact tcaggaactt taccttcatc cagctgaatg 1741 gagaattttc tcggggaaag ggacttgatg ttggagcccg cttctggaag ggaagcaacg 1801 tccttctctt tttctgtgat gtggacatct acttcacatc tgaattcctc aatacgtgta 1861 ggctgaatac acagccaggg aagaaggtat tttatccagt tcttttcagt cagtacaatc 1921 ctggcataat atacggccac catgatgcag tccctccctt ggaacagcag ctggtcataa 1981 agaaggaaac tggattttgg agagactttg gatttgggat gacgtgtcag tatcggtcag 2041 acttcatcaa tataggtggg tttgatctgg acatcaaagg ctggggcgga gaggatgtgc 2101 acctttatcg caagtatctc cacagcaacc tcatagtggt acggacgcct gtgcgaggac 2161 tcttccacct ctggcatgag aagcgctgca tggacgagct gacccccgag cagtacaaga 2221 tgtgcatgca gtccaaggcc atgaacgagg catcccacgg ccagctgggc atgctggtgt 2281 tcaggcacga gatagaggct caccttcgca aacagaaaca gaagacaagt agcaaaaaaa 2341 catgaactcc cagagaagga ttgtgggaga cactttttct ttccttttgc aattactgaa 2401 agtggctgca acagagaaaa gacttccata aaggacgaca aaagaattgg actgatgggt 2461 cagagatgag aaagcctccg atttctctct gttgggcttt ttacaacaga aatcaaaatc 2521 tccgctttgc ctgcaaaagt aacccagttg caccctgtga agtgtctgac aaaggcagaa 2581 tgcttgtgag attataagcc taatggtgtg gaggttttga tggtgtttac aatacactga 2641 gacctgttgt tttgtgtgct cattgaaata ttcatgattt aagagcagtt ttgtaaaaaa 2701 ttcattagca tgaaaggcaa gcatatttct cctcatatga atgagcctat cagcagggct 2761 ctagtttcta ggaatgctaa aatatcagaa ggcaggagag gagataggct tattatgata 2821 ctagtgagta cattaagtaa aataaaatgg accagaaaag aaaagaaacc ataaatatcg 2881 tgtcatattt tccccaagat taaccaaaaa taatctgctt atctttttgg ttgtcctttt 2941 aactgtctcc gtttttttct tttatttaaa aatgcacttt ttttcccttg tgagttatag 3001 tctgcttatt taattaccac tttgcaagcc ttacaagaga gcacaagttg gcctacattt 3061 ttatattttt taagaagata ctttgagatg cattatgaga actttcagtt caaagcatca 3121 aattgatgcc atatccaagg acatgccaaa tgctgattct gtcaggcact gaatgtcagg 3181 cattgagaca tagggaagga atggtttgta ctaatacaga cgtacagata ctttctctga 3241 agagtatttt cgaagaggag caactgaaca ctggaggaaa agaaaatgac actttctgct 3301 ttacagaaaa ggaaactcat tcagactggt gatatcgtga tgtacctaaa agtcagaaac 3361 cacattttct cctcagaagt agggaccgct ttcttacctg tttaaataaa ccaaagtata 3421 ccgtgtgaac caaacaatct cttttcaaaa cagggtgctc ctcctggctt ctggcttcca 3481 taagaagaaa tggagaaaaa tatatatata tatatatata ttgtgaaaga tcaatccatc 3541 tgccagaatc tagtgggatg gaagtttttg ctacatgtta tccaccccag gccaggtgga 3601 agtaactgaa ttatttttta aattaagcag ttctactcga tcaccaagat gcttctgaaa 3661 attgcatttt attaccattt caaactattt tttaaaaata aatacagtta acatagagtg 3721 gtttcttcat tcatgtgaaa attattagcc agcaccagat gcatgagcta attatctctt 3781 tgagtccttg cttctgtttg ctcacagtaa actcattgtt taaaagcttc aagaacattc 3841 aagctgttgg tgtgttaaaa aatgcattgt attgatttgt actggtagtt tatgaaattt 3901 aattaaaaca caggccatga atggaaggtg gtattgcaca gctaataaaa tatgatttgt 3961 ggatatgaaa aaaaaaaaaa aa //