LOCUS BC060772 3982 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase
1, mRNA (cDNA clone MGC:71527 IMAGE:30340553), complete cds.
ACCESSION BC060772
VERSION BC060772.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3982)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3982)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: e Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255140
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3982
/db_xref="H-InvDB:HIT000260074"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71527 IMAGE:30340553"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3982
/gene="CSGALNACT1"
/gene_synonym="beta4GalNAcT"
/gene_synonym="ChGn"
/gene_synonym="CSGalNAcT-1"
/db_xref="GeneID:55790"
/db_xref="HGNC:HGNC:24290"
CDS 460..1353
/gene="CSGALNACT1"
/gene_synonym="beta4GalNAcT"
/gene_synonym="ChGn"
/gene_synonym="CSGalNAcT-1"
/codon_start=1
/product="CSGALNACT1 protein"
/protein_id="AAH60772.1"
/db_xref="GeneID:55790"
/db_xref="HGNC:HGNC:24290"
/translation="MMMVRRGLLAWISRVVVLLVLLCCAISVLYMLACTPKGDEEQLA
LPRANSPTGKEGYQAVLQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASD
AAGLGLDRSPPEKTQADLLAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLE
TGLTRHPEEKPVRKDKRDELVEAIESALETLNNPAENSPNHRPYTASDFIEGIYRTER
DKGTLYELTFKGDHKHEFKRLILFRPFGPIMKVENEKLNMANTLINVIVPLAKRVDKF
RQFMQNFRPADEVFRCVPLSP"
BASE COUNT 1136 a 838 c 950 g 1058 t
ORIGIN
1 tggggcttgt tccgggatcc gcagccttgc tcaggctgtg cattggtgtg gccccgaatt
61 gcacggagct gccttcctat ttcaaggaaa gacgccaagg taattttgac ccagaggagc
121 aatgatgtag ccacctccta accttccctt cttgaacccc caggtcccct cttgctgttg
181 gctgcacatc aggaaggctg tgatgggaat gaaggtgaaa acttggagat ttcacttcag
241 tcattgcttc tgcctgcaag atcatccttt aaaagtagag aagctgctct gtgtggtggt
301 taactccaag aggcagaact cgttctagaa ggaaatggat gcaagcagct ccgggggccc
361 caaacgcatg cttcctgtga tctagcccag ggaagccctt ccgtgggggc cccggctttg
421 agggatgcca ccggttctgg acgcatggct gattcctgaa tgatgatggt tcgccggggg
481 ctgcttgcgt ggatttcccg ggtggtggtt ttgctggtgc tcctctgctg tgctatctct
541 gtcctgtaca tgttggcctg caccccaaaa ggtgacgagg agcagctggc actgcccagg
601 gccaacagcc ccacggggaa ggaggggtac caggccgtcc ttcaggagtg ggaggagcag
661 caccgcaact acgtgagcag cctgaagcgg cagatcgcac agctcaagga ggagctgcag
721 gagaggagtg agcagctcag gaatgggcag taccaagcca gcgatgctgc tggcctgggt
781 ctggacagga gccccccaga gaaaacccag gccgacctcc tggccttcct gcactcgcag
841 gtggacaagg cagaggtgaa tgctggcgtc aagctggcca cagagtatgc agcagtgcct
901 ttcgatagct ttactctaca gaaggtgtac cagctggaga ctggccttac ccgccacccc
961 gaggagaagc ctgtgaggaa ggacaagcgg gatgagttgg tggaagccat tgaatcagcc
1021 ttggagaccc tgaacaatcc tgcagagaac agccccaatc accgtcctta cacggcctct
1081 gatttcatag aagggatcta ccgaacagaa agggacaaag ggacattgta tgagctcacc
1141 ttcaaagggg accacaaaca tgaattcaaa cggctcatct tatttcgacc attcggcccc
1201 atcatgaaag tggaaaatga aaagctcaac atggccaaca cgcttatcaa tgttatcgtg
1261 cctctagcaa aaagggtgga caagttccgg cagttcatgc agaatttcag gcctgctgat
1321 gaagttttta gatgtgtgcc tttaagccct tgattgtgcg gtgttggatc ttagaagctg
1381 tgatggctca gatgcacata ttggctgagg ataaccagct aagtgatttc accagcttgt
1441 tttaaacata gaaaatccta ctgtctaatt ataaatcttg aaagatcaag ctgatttttt
1501 atttcttttt ttttgagatg gagtcttact ctgtcaccca ggctggagtg cagtggcacg
1561 aactctgctc actgcaacct tcacctccca ggttcaggga gatgtgcatt gagcaggatg
1621 ggagagtcca tctcactgtt gtttactttg ggaaagaaga aataaatgaa gtcaaaggaa
1681 tacttgaaaa cacttccaaa gctgccaact tcaggaactt taccttcatc cagctgaatg
1741 gagaattttc tcggggaaag ggacttgatg ttggagcccg cttctggaag ggaagcaacg
1801 tccttctctt tttctgtgat gtggacatct acttcacatc tgaattcctc aatacgtgta
1861 ggctgaatac acagccaggg aagaaggtat tttatccagt tcttttcagt cagtacaatc
1921 ctggcataat atacggccac catgatgcag tccctccctt ggaacagcag ctggtcataa
1981 agaaggaaac tggattttgg agagactttg gatttgggat gacgtgtcag tatcggtcag
2041 acttcatcaa tataggtggg tttgatctgg acatcaaagg ctggggcgga gaggatgtgc
2101 acctttatcg caagtatctc cacagcaacc tcatagtggt acggacgcct gtgcgaggac
2161 tcttccacct ctggcatgag aagcgctgca tggacgagct gacccccgag cagtacaaga
2221 tgtgcatgca gtccaaggcc atgaacgagg catcccacgg ccagctgggc atgctggtgt
2281 tcaggcacga gatagaggct caccttcgca aacagaaaca gaagacaagt agcaaaaaaa
2341 catgaactcc cagagaagga ttgtgggaga cactttttct ttccttttgc aattactgaa
2401 agtggctgca acagagaaaa gacttccata aaggacgaca aaagaattgg actgatgggt
2461 cagagatgag aaagcctccg atttctctct gttgggcttt ttacaacaga aatcaaaatc
2521 tccgctttgc ctgcaaaagt aacccagttg caccctgtga agtgtctgac aaaggcagaa
2581 tgcttgtgag attataagcc taatggtgtg gaggttttga tggtgtttac aatacactga
2641 gacctgttgt tttgtgtgct cattgaaata ttcatgattt aagagcagtt ttgtaaaaaa
2701 ttcattagca tgaaaggcaa gcatatttct cctcatatga atgagcctat cagcagggct
2761 ctagtttcta ggaatgctaa aatatcagaa ggcaggagag gagataggct tattatgata
2821 ctagtgagta cattaagtaa aataaaatgg accagaaaag aaaagaaacc ataaatatcg
2881 tgtcatattt tccccaagat taaccaaaaa taatctgctt atctttttgg ttgtcctttt
2941 aactgtctcc gtttttttct tttatttaaa aatgcacttt ttttcccttg tgagttatag
3001 tctgcttatt taattaccac tttgcaagcc ttacaagaga gcacaagttg gcctacattt
3061 ttatattttt taagaagata ctttgagatg cattatgaga actttcagtt caaagcatca
3121 aattgatgcc atatccaagg acatgccaaa tgctgattct gtcaggcact gaatgtcagg
3181 cattgagaca tagggaagga atggtttgta ctaatacaga cgtacagata ctttctctga
3241 agagtatttt cgaagaggag caactgaaca ctggaggaaa agaaaatgac actttctgct
3301 ttacagaaaa ggaaactcat tcagactggt gatatcgtga tgtacctaaa agtcagaaac
3361 cacattttct cctcagaagt agggaccgct ttcttacctg tttaaataaa ccaaagtata
3421 ccgtgtgaac caaacaatct cttttcaaaa cagggtgctc ctcctggctt ctggcttcca
3481 taagaagaaa tggagaaaaa tatatatata tatatatata ttgtgaaaga tcaatccatc
3541 tgccagaatc tagtgggatg gaagtttttg ctacatgtta tccaccccag gccaggtgga
3601 agtaactgaa ttatttttta aattaagcag ttctactcga tcaccaagat gcttctgaaa
3661 attgcatttt attaccattt caaactattt tttaaaaata aatacagtta acatagagtg
3721 gtttcttcat tcatgtgaaa attattagcc agcaccagat gcatgagcta attatctctt
3781 tgagtccttg cttctgtttg ctcacagtaa actcattgtt taaaagcttc aagaacattc
3841 aagctgttgg tgtgttaaaa aatgcattgt attgatttgt actggtagtt tatgaaattt
3901 aattaaaaca caggccatga atggaaggtg gtattgcaca gctaataaaa tatgatttgt
3961 ggatatgaaa aaaaaaaaaa aa
//