LOCUS BC056869 1569 bp mRNA linear HUM 05-NOV-2003 DEFINITION Homo sapiens autocrine motility factor receptor, mRNA (cDNA clone IMAGE:5109314), partial cds. ACCESSION BC056869 VERSION BC056869.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1569) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1569) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (25-AUG-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: c Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21071000. FEATURES Location/Qualifiers source 1..1569 /db_xref="H-InvDB:HIT000259594" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5109314" /tissue_type="Cervix, carcinoma" /clone_lib="NIH_MGC_12" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..1569 /gene="AMFR" /gene_synonym="GP78" /gene_synonym="RNF45" /db_xref="GeneID:267" /db_xref="MIM:603243" CDS <1..609 /gene="AMFR" /gene_synonym="GP78" /gene_synonym="RNF45" /codon_start=1 /product="AMFR protein" /protein_id="AAH56869.1" /db_xref="GeneID:267" /db_xref="MIM:603243" /translation="HTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRS VEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEEGETSAQTERVPLDLSP RLEETLDFGEVEVEPSEVEDFEARGSRFSKSADERQRMLVQRKDELLQQARKRFLNKS SEDDAASESFLPSEGASSDPVTLRRRMLAAAAERRLQKQQTS" misc_feature 43..168 /gene="AMFR" /gene_synonym="GP78" /gene_synonym="RNF45" /note="CUE; Region: CUE domain. CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2" /db_xref="CDD:pfam02845" BASE COUNT 374 a 404 c 420 g 371 t ORIGIN 1 cacaccacca acattcttgg cattacgcag gccagcaact cccagctcaa tgcaatggct 61 catcagattc aagagatgtt tccccaggtt ccataccatc tggtactgca ggacctccag 121 ctgacacgct cagttgaaat aacaacagac aatattttag aaggacggat tcaagtacct 181 tttcctacac agcggtcaga tagcatcaga cctgcattga acagtcctgt ggaaaggcca 241 agcagtgacc aggaagaggg agaaacttct gctcagaccg agcgtgtgcc actggacctc 301 agtcctcgcc tggaggagac gctggacttc ggcgaggtgg aagtggagcc cagtgaggtg 361 gaagacttcg aggctcgtgg gagccgcttc tccaagtctg ctgatgagag acagcgcatg 421 ctggtgcagc gtaaggacga actcctccag caagctcgca aacgtttctt gaacaaaagt 481 tctgaagatg atgcggcctc agagagcttc ctcccctcgg aaggtgcgtc ctctgacccc 541 gtgaccctgc gtcgaaggat gctggctgcc gccgcggaac ggaggcttca gaagcagcag 601 acctcctagc gctcccttgc cttcctcagc tgcctcctgc gccctgtgcc cgactgactg 661 gaggaggcct gtcccaattc tgcccgctcc atggaaaagc gggcttgact gcattgccgc 721 tgtataaagc atgtggtctt atagtgtttg gacagctgat aaatttaatc cttctttgta 781 atactttcta tgtgacattt ctcttcccct tagaaacact gcaaatttta actgtaggta 841 tgatctcttc tggtgttgac tggactgctt ggggtggggg acgatcagga ggaagtgagc 901 agtcgcctgc ctgcagcagg cagcttctac tcctgcctca tgcatacgtc ccacaaatgc 961 aggtgtcctg agcaccacac ccagtgggaa gagtgtgggg gaggcgcaca gtgtgagccc 1021 gcccccacgt cgtggggtaa catctgttat caaactgctg tcgttgttgt ggaagcatgt 1081 agactgtgcc agaggccaga cccacgggct catgcacccc tgagccagca gggcatcttg 1141 gaaaaggaac tcttggttcg atacctggag cagaggaggg gaaagtccag ggctataggg 1201 tgtgatgaag tcaccccttt ctgtcccact acatctggga ctgactttcc gagcctccag 1261 tccaaagccg gcttgatttc cgtgaactct ggtgctcctg catctcatga gtgtgcccca 1321 tgggtcccct cccctctcag catttccttg tcccgtctgg acctggggag tggttaggca 1381 gcaagctttg gtttatggtt ttcattcatt ggtgaagtaa attaggcagt gctaaagcct 1441 gtgggtttgg tccttgaaca agatgtgggc cttgcaagat gggagagtaa accttgaagg 1501 gctttattaa agaaataaaa aagaactttt gtatctttta tcctgggaaa aaaaaaaaaa 1561 aaaaaaaaa //