LOCUS BC056869 1569 bp mRNA linear HUM 05-NOV-2003
DEFINITION Homo sapiens autocrine motility factor receptor, mRNA (cDNA clone
IMAGE:5109314), partial cds.
ACCESSION BC056869
VERSION BC056869.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1569)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1569)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21071000.
FEATURES Location/Qualifiers
source 1..1569
/db_xref="H-InvDB:HIT000259594"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5109314"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1569
/gene="AMFR"
/gene_synonym="GP78"
/gene_synonym="RNF45"
/db_xref="GeneID:267"
/db_xref="MIM:603243"
CDS <1..609
/gene="AMFR"
/gene_synonym="GP78"
/gene_synonym="RNF45"
/codon_start=1
/product="AMFR protein"
/protein_id="AAH56869.1"
/db_xref="GeneID:267"
/db_xref="MIM:603243"
/translation="HTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRS
VEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEEGETSAQTERVPLDLSP
RLEETLDFGEVEVEPSEVEDFEARGSRFSKSADERQRMLVQRKDELLQQARKRFLNKS
SEDDAASESFLPSEGASSDPVTLRRRMLAAAAERRLQKQQTS"
misc_feature 43..168
/gene="AMFR"
/gene_synonym="GP78"
/gene_synonym="RNF45"
/note="CUE; Region: CUE domain. CUE domains have been
shown to bind ubiquitin. It has been suggested that CUE
domains are related to pfam00627. CUE domains also occur
in two protein of the IL-1 signal transduction pathway,
tollip and TAB2"
/db_xref="CDD:pfam02845"
BASE COUNT 374 a 404 c 420 g 371 t
ORIGIN
1 cacaccacca acattcttgg cattacgcag gccagcaact cccagctcaa tgcaatggct
61 catcagattc aagagatgtt tccccaggtt ccataccatc tggtactgca ggacctccag
121 ctgacacgct cagttgaaat aacaacagac aatattttag aaggacggat tcaagtacct
181 tttcctacac agcggtcaga tagcatcaga cctgcattga acagtcctgt ggaaaggcca
241 agcagtgacc aggaagaggg agaaacttct gctcagaccg agcgtgtgcc actggacctc
301 agtcctcgcc tggaggagac gctggacttc ggcgaggtgg aagtggagcc cagtgaggtg
361 gaagacttcg aggctcgtgg gagccgcttc tccaagtctg ctgatgagag acagcgcatg
421 ctggtgcagc gtaaggacga actcctccag caagctcgca aacgtttctt gaacaaaagt
481 tctgaagatg atgcggcctc agagagcttc ctcccctcgg aaggtgcgtc ctctgacccc
541 gtgaccctgc gtcgaaggat gctggctgcc gccgcggaac ggaggcttca gaagcagcag
601 acctcctagc gctcccttgc cttcctcagc tgcctcctgc gccctgtgcc cgactgactg
661 gaggaggcct gtcccaattc tgcccgctcc atggaaaagc gggcttgact gcattgccgc
721 tgtataaagc atgtggtctt atagtgtttg gacagctgat aaatttaatc cttctttgta
781 atactttcta tgtgacattt ctcttcccct tagaaacact gcaaatttta actgtaggta
841 tgatctcttc tggtgttgac tggactgctt ggggtggggg acgatcagga ggaagtgagc
901 agtcgcctgc ctgcagcagg cagcttctac tcctgcctca tgcatacgtc ccacaaatgc
961 aggtgtcctg agcaccacac ccagtgggaa gagtgtgggg gaggcgcaca gtgtgagccc
1021 gcccccacgt cgtggggtaa catctgttat caaactgctg tcgttgttgt ggaagcatgt
1081 agactgtgcc agaggccaga cccacgggct catgcacccc tgagccagca gggcatcttg
1141 gaaaaggaac tcttggttcg atacctggag cagaggaggg gaaagtccag ggctataggg
1201 tgtgatgaag tcaccccttt ctgtcccact acatctggga ctgactttcc gagcctccag
1261 tccaaagccg gcttgatttc cgtgaactct ggtgctcctg catctcatga gtgtgcccca
1321 tgggtcccct cccctctcag catttccttg tcccgtctgg acctggggag tggttaggca
1381 gcaagctttg gtttatggtt ttcattcatt ggtgaagtaa attaggcagt gctaaagcct
1441 gtgggtttgg tccttgaaca agatgtgggc cttgcaagat gggagagtaa accttgaagg
1501 gctttattaa agaaataaaa aagaactttt gtatctttta tcctgggaaa aaaaaaaaaa
1561 aaaaaaaaa
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