LOCUS BC056202 3750 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens calpain 7, mRNA (cDNA clone MGC:51000 IMAGE:5274889), complete cds. ACCESSION BC056202 VERSION BC056202.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3750) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3750) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-AUG-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 91 Row: f Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 41327720. FEATURES Location/Qualifiers source 1..3750 /db_xref="H-InvDB:HIT000054139" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:51000 IMAGE:5274889" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3750 /gene="CAPN7" /gene_synonym="CALPAIN7" /gene_synonym="PALBH" /db_xref="GeneID:23473" /db_xref="HGNC:HGNC:1484" /db_xref="MIM:606400" CDS 249..2690 /gene="CAPN7" /gene_synonym="CALPAIN7" /gene_synonym="PALBH" /codon_start=1 /product="calpain 7" /protein_id="AAH56202.1" /db_xref="GeneID:23473" /db_xref="HGNC:HGNC:1484" /db_xref="MIM:606400" /translation="MDATALERDAVQFARLAVQRDHEGRYSEAVFYYKEAAQALIYAE MAGSSLENIQEKITEYLERVQALHSAVQSKSADPLKSKHQLDLERAHFLVTQAFDEDE KENVEDAIELYTEAVDLCLKTSYETADKVLQNKLKQLARQALDRAEALGEPLTKPVGK ISSTSVKPKPPPERAHFPLGANPFLERPQSFISPQSCDAQGQRYTAEEIEVLRTTSKI NGIEYVPFMNVDLRERFAYPMPFCDRWGKLPLSPKQKTTFSKWVRPEDLTNNPTMIYT VSSFSIKQTIVSDCSFVASLAISAAYERRFNKKLITGIIYPQNKDGEPEYNPCGKYMV KLHLNGVPRKVIIDDQLPVDHKGELLCSYSNNKSELWVSLIEKAYMKVMGGYDFPGSN SNIDLHALTGWIPERIAMHSDSQTFSKDNSFRMLYQRFHKGDVLITASTGMMTEAEGE KWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRWKGRYSENDVENWTPELQKYLNFD PRTAQKIDNGIFWISWDDLCQYYDVIYLSWNPGLFKESTCIHSTWDAKQGPVKDAYSL ANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMVVYKTDGKKVYYPADP PPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKI PSPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKTGPLLIELRGPRQYSVG FEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFF LDFNSIIPIKITQLQ" BASE COUNT 1174 a 729 c 810 g 1037 t ORIGIN 1 gggccgctgg ggccgcgaag tggggcggcc gggtgggcta caagccgggt ctgggctgag 61 gggcgcggct tcgcggtgga cccgagcccg gcaacgggaa ggcgagctct cctccaccgt 121 ccaaagtaaa ctttgccgct ccttccgcgg cgctcccgag tcctcgccgc cgccgggccg 181 ccgcagtccg cgaagagccg tcctgcgtca gggcctcctt ccctgccccg gcgcggggcc 241 actgcgccat ggacgccaca gcactggagc gggacgctgt gcagttcgcc cgtctggcgg 301 ttcagcgcga ccacgaaggc cgctactccg aggcggtgtt ttattacaag gaagctgcac 361 aagccttaat ttatgctgag atggcaggat caagcctaga aaatattcaa gaaaaaataa 421 ctgagtatct ggaaagagtt caagctctac attcagcagt tcagtcaaag agtgctgatc 481 ctttgaagtc aaaacatcag ttggacttag agcgtgctca tttccttgtt acacaagctt 541 ttgatgaaga tgaaaaagag aatgttgaag atgctataga attgtacaca gaagctgtgg 601 atctctgtct gaaaacatct tatgaaactg ctgataaagt cctgcaaaat aaactgaaac 661 agttggctcg acaggcgcta gacagagcag aagcgctggg tgagcctttg accaagccag 721 ttggcaaaat cagttcaaca agtgttaagc caaagccacc tccagagaga gcacattttc 781 cactgggcgc taatcccttc cttgaaagac ctcagtcatt tataagtcct cagtcatgtg 841 atgcacaagg acagagatac acagcagaag aaatagaagt actcaggaca acatcaaaaa 901 taaatggtat agaatatgtt cctttcatga atgttgacct gagagaacgt tttgcctatc 961 caatgccttt ctgtgataga tggggcaagc taccattatc acctaaacaa aaaactacat 1021 tttccaagtg ggtacgacca gaagacctca ccaacaatcc tacaatgata tatactgtgt 1081 ccagttttag cataaagcag acaatagtat cggattgctc ctttgtggca tcactggcca 1141 tcagtgcagc ttatgaaaga cgttttaata agaagttaat taccggcata atttaccctc 1201 aaaacaagga tggtgaacca gaatacaatc catgtgggaa gtatatggta aaacttcacc 1261 tcaatggtgt cccaagaaag gtgataattg atgaccagtt acctgttgat cacaagggag 1321 aattgctctg ttcttattcc aacaacaaaa gtgaattatg ggtttctctc atagaaaaag 1381 catacatgaa agtcatggga ggatatgatt ttccaggatc caactccaat attgatcttc 1441 atgcactgac tggctggata ccagaaagaa ttgctatgca ttcagatagc caaactttca 1501 gtaaggataa ttctttcaga atgctttatc aaagatttca caaaggagat gtcctcatca 1561 ctgcgtcaac tggaatgatg acagaagctg aaggagagaa gtggggtctg gttcccacac 1621 acgcatatgc tgttttggat attagagagt tcaaggggct gcgatttatc cagttgaaaa 1681 atccttggag tcatttacgt tggaaaggaa gatacagtga aaatgatgta gaaaactgga 1741 ccccagagtt gcaaaagtat ttaaactttg atccccgaac agctcagaaa atagacaacg 1801 gaatattttg gatttcctgg gatgatctct gccagtatta tgatgtgatt tatttgagtt 1861 ggaatccagg tctttttaaa gaatcaacat gtattcacag tacttgggat gctaagcaag 1921 gacctgtgaa agatgcctat agcctggcca acaaccccca gtacaaactg gaggtgcagt 1981 gtccacaggg gggtgctgca gtttgggttt tgcttagtag acacataaca gacaaggatg 2041 attttgcgaa taatcgagaa tttatcacaa tggttgtata caagactgat gggaaaaaag 2101 tttattaccc agctgaccca cctccataca ttgatggaat tcgaattaac agccctcatt 2161 atttgactaa gataaagctg accacacctg gcacccatac ctttacatta gtggtttctc 2221 aatatgaaaa acagaacaca atccattaca cggttcgggt atattcagca tgcagcttta 2281 ctttttcaaa gattccttca ccatacacct tatcaaaacg gattaatgga aagtggagtg 2341 gtcagagtgc tggaggatgt ggaaatttcc aagagactca caaaaataac cccatctacc 2401 aattccatat agaaaagact gggccgttac tgattgagct acgaggacca aggcaatata 2461 gcgttggatt tgaggttgta acagtttcta ctctaggaga tcctggtccc catggctttc 2521 tgaggaaatc tagtggtgac tataggtgtg ggttttgcta cctggaatta gaaaatatac 2581 cttctgggat cttcaatatc attcctagta cctttttgcc taaacaagaa ggaccttttt 2641 tcttggactt taatagtatt atccccatca agatcacaca acttcagtga tggagaaatc 2701 tcaagttact ggcttttata cttaccaaac atcagttctt caaataagga cgcaaatctt 2761 caggacagta agcagaacaa tcagaatgga attaaatctc taaaaacgtg ttacagtgga 2821 atctggtgct tgtcagggtg tttggtaaga actgtatata gtcagaatta cctaaatcac 2881 ctagaggtac cgtttacatg gttttgtgta tatagagttg gcttgcattt taggggccat 2941 tttgtataaa aagtgcatat gattaaaatt agactcagtc atcactgtga gatgcctttg 3001 ctaagaggat aaaggaactg agaccagatg agaaaaagaa aggatataga ttccttgagt 3061 ggaatagtgg gctagattaa tataccgaaa tatttccatt gtttcccttt tttgcagagc 3121 atgtggaagt taaacctgct tgattctact atacatcttg ggcaactagt taccaaatga 3181 attgtgccac cataactgat tttaattttg cattatttat gattttaaaa tatttgttgc 3241 ccaggtgtta tgaaagaata aagcttttaa gtatagacta ccttagcatg aagatgctca 3301 tgcctaagaa tgaaaattgt tgaggttatc tcccattcaa tcatgtagca agaacttaaa 3361 gaaattcact actgcagttt ttatttttaa aaaacagtaa ttgagatatt gaagacatta 3421 caatttagtt tgtgtggtct ttttttaaat tgctgtatcg ttcagtctct tttgtggcaa 3481 tagcactttg aagaaaatag agaatttaat atatggtgat tgggatatgt agcattcaaa 3541 aaaagtgaat tgccaagata ctggtgtcat gtaaattccc actttacata aaaacccatc 3601 aggacagaat gatgctcaat attttaaaat tctaaaaata gggtgggatt tttcattgtc 3661 tctactttat aattatcaaa acttattttg tattgctact accttaaatt gaaataaaat 3721 gtttatactt acggaaaaaa aaaaaaaaaa //