LOCUS BC056202 3750 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens calpain 7, mRNA (cDNA clone MGC:51000 IMAGE:5274889),
complete cds.
ACCESSION BC056202
VERSION BC056202.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3750)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3750)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: f Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41327720.
FEATURES Location/Qualifiers
source 1..3750
/db_xref="H-InvDB:HIT000054139"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51000 IMAGE:5274889"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3750
/gene="CAPN7"
/gene_synonym="CALPAIN7"
/gene_synonym="PALBH"
/db_xref="GeneID:23473"
/db_xref="HGNC:HGNC:1484"
/db_xref="MIM:606400"
CDS 249..2690
/gene="CAPN7"
/gene_synonym="CALPAIN7"
/gene_synonym="PALBH"
/codon_start=1
/product="calpain 7"
/protein_id="AAH56202.1"
/db_xref="GeneID:23473"
/db_xref="HGNC:HGNC:1484"
/db_xref="MIM:606400"
/translation="MDATALERDAVQFARLAVQRDHEGRYSEAVFYYKEAAQALIYAE
MAGSSLENIQEKITEYLERVQALHSAVQSKSADPLKSKHQLDLERAHFLVTQAFDEDE
KENVEDAIELYTEAVDLCLKTSYETADKVLQNKLKQLARQALDRAEALGEPLTKPVGK
ISSTSVKPKPPPERAHFPLGANPFLERPQSFISPQSCDAQGQRYTAEEIEVLRTTSKI
NGIEYVPFMNVDLRERFAYPMPFCDRWGKLPLSPKQKTTFSKWVRPEDLTNNPTMIYT
VSSFSIKQTIVSDCSFVASLAISAAYERRFNKKLITGIIYPQNKDGEPEYNPCGKYMV
KLHLNGVPRKVIIDDQLPVDHKGELLCSYSNNKSELWVSLIEKAYMKVMGGYDFPGSN
SNIDLHALTGWIPERIAMHSDSQTFSKDNSFRMLYQRFHKGDVLITASTGMMTEAEGE
KWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRWKGRYSENDVENWTPELQKYLNFD
PRTAQKIDNGIFWISWDDLCQYYDVIYLSWNPGLFKESTCIHSTWDAKQGPVKDAYSL
ANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMVVYKTDGKKVYYPADP
PPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKI
PSPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKTGPLLIELRGPRQYSVG
FEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFF
LDFNSIIPIKITQLQ"
BASE COUNT 1174 a 729 c 810 g 1037 t
ORIGIN
1 gggccgctgg ggccgcgaag tggggcggcc gggtgggcta caagccgggt ctgggctgag
61 gggcgcggct tcgcggtgga cccgagcccg gcaacgggaa ggcgagctct cctccaccgt
121 ccaaagtaaa ctttgccgct ccttccgcgg cgctcccgag tcctcgccgc cgccgggccg
181 ccgcagtccg cgaagagccg tcctgcgtca gggcctcctt ccctgccccg gcgcggggcc
241 actgcgccat ggacgccaca gcactggagc gggacgctgt gcagttcgcc cgtctggcgg
301 ttcagcgcga ccacgaaggc cgctactccg aggcggtgtt ttattacaag gaagctgcac
361 aagccttaat ttatgctgag atggcaggat caagcctaga aaatattcaa gaaaaaataa
421 ctgagtatct ggaaagagtt caagctctac attcagcagt tcagtcaaag agtgctgatc
481 ctttgaagtc aaaacatcag ttggacttag agcgtgctca tttccttgtt acacaagctt
541 ttgatgaaga tgaaaaagag aatgttgaag atgctataga attgtacaca gaagctgtgg
601 atctctgtct gaaaacatct tatgaaactg ctgataaagt cctgcaaaat aaactgaaac
661 agttggctcg acaggcgcta gacagagcag aagcgctggg tgagcctttg accaagccag
721 ttggcaaaat cagttcaaca agtgttaagc caaagccacc tccagagaga gcacattttc
781 cactgggcgc taatcccttc cttgaaagac ctcagtcatt tataagtcct cagtcatgtg
841 atgcacaagg acagagatac acagcagaag aaatagaagt actcaggaca acatcaaaaa
901 taaatggtat agaatatgtt cctttcatga atgttgacct gagagaacgt tttgcctatc
961 caatgccttt ctgtgataga tggggcaagc taccattatc acctaaacaa aaaactacat
1021 tttccaagtg ggtacgacca gaagacctca ccaacaatcc tacaatgata tatactgtgt
1081 ccagttttag cataaagcag acaatagtat cggattgctc ctttgtggca tcactggcca
1141 tcagtgcagc ttatgaaaga cgttttaata agaagttaat taccggcata atttaccctc
1201 aaaacaagga tggtgaacca gaatacaatc catgtgggaa gtatatggta aaacttcacc
1261 tcaatggtgt cccaagaaag gtgataattg atgaccagtt acctgttgat cacaagggag
1321 aattgctctg ttcttattcc aacaacaaaa gtgaattatg ggtttctctc atagaaaaag
1381 catacatgaa agtcatggga ggatatgatt ttccaggatc caactccaat attgatcttc
1441 atgcactgac tggctggata ccagaaagaa ttgctatgca ttcagatagc caaactttca
1501 gtaaggataa ttctttcaga atgctttatc aaagatttca caaaggagat gtcctcatca
1561 ctgcgtcaac tggaatgatg acagaagctg aaggagagaa gtggggtctg gttcccacac
1621 acgcatatgc tgttttggat attagagagt tcaaggggct gcgatttatc cagttgaaaa
1681 atccttggag tcatttacgt tggaaaggaa gatacagtga aaatgatgta gaaaactgga
1741 ccccagagtt gcaaaagtat ttaaactttg atccccgaac agctcagaaa atagacaacg
1801 gaatattttg gatttcctgg gatgatctct gccagtatta tgatgtgatt tatttgagtt
1861 ggaatccagg tctttttaaa gaatcaacat gtattcacag tacttgggat gctaagcaag
1921 gacctgtgaa agatgcctat agcctggcca acaaccccca gtacaaactg gaggtgcagt
1981 gtccacaggg gggtgctgca gtttgggttt tgcttagtag acacataaca gacaaggatg
2041 attttgcgaa taatcgagaa tttatcacaa tggttgtata caagactgat gggaaaaaag
2101 tttattaccc agctgaccca cctccataca ttgatggaat tcgaattaac agccctcatt
2161 atttgactaa gataaagctg accacacctg gcacccatac ctttacatta gtggtttctc
2221 aatatgaaaa acagaacaca atccattaca cggttcgggt atattcagca tgcagcttta
2281 ctttttcaaa gattccttca ccatacacct tatcaaaacg gattaatgga aagtggagtg
2341 gtcagagtgc tggaggatgt ggaaatttcc aagagactca caaaaataac cccatctacc
2401 aattccatat agaaaagact gggccgttac tgattgagct acgaggacca aggcaatata
2461 gcgttggatt tgaggttgta acagtttcta ctctaggaga tcctggtccc catggctttc
2521 tgaggaaatc tagtggtgac tataggtgtg ggttttgcta cctggaatta gaaaatatac
2581 cttctgggat cttcaatatc attcctagta cctttttgcc taaacaagaa ggaccttttt
2641 tcttggactt taatagtatt atccccatca agatcacaca acttcagtga tggagaaatc
2701 tcaagttact ggcttttata cttaccaaac atcagttctt caaataagga cgcaaatctt
2761 caggacagta agcagaacaa tcagaatgga attaaatctc taaaaacgtg ttacagtgga
2821 atctggtgct tgtcagggtg tttggtaaga actgtatata gtcagaatta cctaaatcac
2881 ctagaggtac cgtttacatg gttttgtgta tatagagttg gcttgcattt taggggccat
2941 tttgtataaa aagtgcatat gattaaaatt agactcagtc atcactgtga gatgcctttg
3001 ctaagaggat aaaggaactg agaccagatg agaaaaagaa aggatataga ttccttgagt
3061 ggaatagtgg gctagattaa tataccgaaa tatttccatt gtttcccttt tttgcagagc
3121 atgtggaagt taaacctgct tgattctact atacatcttg ggcaactagt taccaaatga
3181 attgtgccac cataactgat tttaattttg cattatttat gattttaaaa tatttgttgc
3241 ccaggtgtta tgaaagaata aagcttttaa gtatagacta ccttagcatg aagatgctca
3301 tgcctaagaa tgaaaattgt tgaggttatc tcccattcaa tcatgtagca agaacttaaa
3361 gaaattcact actgcagttt ttatttttaa aaaacagtaa ttgagatatt gaagacatta
3421 caatttagtt tgtgtggtct ttttttaaat tgctgtatcg ttcagtctct tttgtggcaa
3481 tagcactttg aagaaaatag agaatttaat atatggtgat tgggatatgt agcattcaaa
3541 aaaagtgaat tgccaagata ctggtgtcat gtaaattccc actttacata aaaacccatc
3601 aggacagaat gatgctcaat attttaaaat tctaaaaata gggtgggatt tttcattgtc
3661 tctactttat aattatcaaa acttattttg tattgctact accttaaatt gaaataaaat
3721 gtttatactt acggaaaaaa aaaaaaaaaa
//