LOCUS BC056148 2671 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens nuclear receptor subfamily 1, group D, member 1, mRNA (cDNA clone MGC:64943 IMAGE:6195844), complete cds. ACCESSION BC056148 VERSION BC056148.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2671) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2671) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-AUG-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: o Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13430847. FEATURES Location/Qualifiers source 1..2671 /db_xref="H-InvDB:HIT000054131" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:64943 IMAGE:6195844" /tissue_type="Peripheral Nervous System, sympathetic trunk" /clone_lib="Lupski_sympathetic_trunk" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2671 /gene="NR1D1" /gene_synonym="ear-1" /gene_synonym="EAR1" /gene_synonym="hRev" /gene_synonym="THRA1" /db_xref="GeneID:9572" /db_xref="HGNC:HGNC:7962" /db_xref="MIM:602408" CDS 523..2367 /gene="NR1D1" /gene_synonym="ear-1" /gene_synonym="EAR1" /gene_synonym="hRev" /gene_synonym="THRA1" /codon_start=1 /product="nuclear receptor subfamily 1, group D, member 1" /protein_id="AAH56148.1" /db_xref="GeneID:9572" /db_xref="HGNC:HGNC:7962" /db_xref="MIM:602408" /translation="MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSL TQGCPTYFPPSPTGSLTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGS LQVAMEDSSRVSPSKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSI QQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLA EMQSAMNLANNQLSSQCPLETSPTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPP RSPSPEPTVEDVISQVARAHREIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWENQ GCPPAPNDNNTLAAQRHNEALNGLRQAPSSYPPTWPPGPAHHSCHQSNSNGHRLCPTH VYAAPEGKAPANSPRQGNSKNVLLACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREV VEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQEL GAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETL LRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ" BASE COUNT 556 a 923 c 642 g 550 t ORIGIN 1 ctcgggcaaa aggcggctga gattggcaga gtgaaatatt actgccgagg gaacgtagca 61 gggcacacgt ctcgcctctt tgcgactcgg tgccccgttt ctccccatca cctacttact 121 tcctggttgc aacctctctt cctctgggac ttttgcaccg ggagctccag attcgccacc 181 ccgcagcgct gcggagccgg caggcagagg caccccgtac actgcagaga cccgaccctc 241 cttgctacct tctagccaga actactgcag gctgattccc cctacacact ctctctgctc 301 ttcccatgca aagcagaact ccgttgcctc aacgtccaac ccttctgcag ggctgcagtc 361 cggccacccc aagaccttgc tgcagggtgc ttcggatcct gatcgtgagt cgcggggtcc 421 actccccgcc cttagccagt gcccaggggg caacagcggc gatcgcaacc tctagtttga 481 gtcaaggtcc agtttgaatg accgctctca gctggtgaag acatgacgac cctggactcc 541 aacaacaaca caggtggcgt catcacctac attggctcca gtggctcctc cccaagccgc 601 accagccctg aatccctcta tagtgacaac tccaatggca gcttccagtc cctgacccaa 661 ggctgtccca cctacttccc accatccccc actggctccc tcacccaaga cccggctcgc 721 tcctttggga gcattccacc cagcctgagt gatgacggct ccccttcttc ctcatcttcc 781 tcgtcgtcat cctcctcctc cttctataat gggagccccc ctgggagtct acaagtggcc 841 atggaggaca gcagccgagt gtcccccagc aagagcacca gcaacatcac caagctgaat 901 ggcatggtgt tactgtgtaa agtgtgtggg gacgttgcct cgggcttcca ctacggtgtg 961 cacgcctgcg agggctgcaa gggctttttc cgtcggagca tccagcagaa catccagtac 1021 aaaaggtgtc tgaagaatga gaattgctcc atcgtccgca tcaatcgcaa ccgctgccag 1081 caatgtcgct tcaagaagtg tctctctgtg ggcatgtctc gagacgctgt gcgttttggg 1141 cgcatcccca aacgagagaa gcagcggatg cttgctgaga tgcagagtgc catgaacctg 1201 gccaacaacc agttgagcag ccagtgcccg ctggagactt cacccaccca gcaccccacc 1261 ccaggcccca tgggcccctc gccaccccct gctccggtcc cctcacccct ggtgggcttc 1321 tcccagtttc cacaacagct gacgcctccc agatccccaa gccctgagcc cacagtggag 1381 gatgtgatat cccaggtggc ccgggcccat cgagagatct tcacctacgc ccatgacaag 1441 ctgggcagct cacctggcaa cttcaatgcc aaccatgcat caggtagccc tccagccacc 1501 accccacatc gctgggaaaa tcagggctgc ccacctgccc ccaatgacaa caacaccttg 1561 gctgcccagc gtcataacga ggccctaaat ggtctgcgcc aggctccctc ctcctaccct 1621 cccacctggc ctcctggccc tgcacaccac agctgccacc agtccaacag caacgggcac 1681 cgtctatgcc ccacccacgt gtatgcagcc ccagaaggca aggcacctgc caacagtccc 1741 cggcagggca actcaaagaa tgttctgctg gcatgtccta tgaacatgta cccgcatgga 1801 cgcagtgggc gaacggtgca ggagatctgg gaggatttct ccatgagctt cacgcccgct 1861 gtgcgggagg tggtagagtt tgccaaacac atcccgggct tccgtgacct ttctcagcat 1921 gaccaagtca ccctgcttaa ggctggcacc tttgaggtgc tgatggtgcg ctttgcttcg 1981 ttgttcaacg tgaaggacca gacagtgatg ttcctaagcc gcaccaccta cagcctgcag 2041 gagcttggtg ccatgggcat gggagacctg ctcagtgcca tgttcgactt cagcgagaag 2101 ctcaactccc tggcgcttac cgaggaggag ctgggcctct tcaccgcggt ggtgcttgtc 2161 tctgcagacc gctcgggcat ggagaattcc gcttcggtgg agcagctcca ggagacgctg 2221 ctgcgggctc ttcgggctct ggtgctgaag aaccggccct tggagacttc ccgcttcacc 2281 aagctgctgc tcaagctgcc ggacctgcgg accctgaaca acatgcattc cgagaagctg 2341 ctgtccttcc gggtggacgc ccagtgaccc gcccggccgg ccttctgccg ctgccccctt 2401 gtacagaatc gaactctgca cttctctctc ctttacgaga cgaaaaggaa aagcaaacca 2461 gaatcttatt tatattgtta taaaatattc caagatgagc ctctggcccc ctgagccttc 2521 ttgtaaatac ctgcctccct cccccatcac cgaacttccc ctcctcccct atttaaacca 2581 ctctgtctcc cccacaaccc tcccctggcc ctctgatttg ttctgttcct gtctcaaatc 2641 caatagttca cagctgaaaa aaaaaaaaaa a //