LOCUS BC056148 2671 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear receptor subfamily 1, group D, member 1, mRNA
(cDNA clone MGC:64943 IMAGE:6195844), complete cds.
ACCESSION BC056148
VERSION BC056148.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2671)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2671)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13430847.
FEATURES Location/Qualifiers
source 1..2671
/db_xref="H-InvDB:HIT000054131"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:64943 IMAGE:6195844"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2671
/gene="NR1D1"
/gene_synonym="ear-1"
/gene_synonym="EAR1"
/gene_synonym="hRev"
/gene_synonym="THRA1"
/db_xref="GeneID:9572"
/db_xref="HGNC:HGNC:7962"
/db_xref="MIM:602408"
CDS 523..2367
/gene="NR1D1"
/gene_synonym="ear-1"
/gene_synonym="EAR1"
/gene_synonym="hRev"
/gene_synonym="THRA1"
/codon_start=1
/product="nuclear receptor subfamily 1, group D, member 1"
/protein_id="AAH56148.1"
/db_xref="GeneID:9572"
/db_xref="HGNC:HGNC:7962"
/db_xref="MIM:602408"
/translation="MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSL
TQGCPTYFPPSPTGSLTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSFYNGSPPGS
LQVAMEDSSRVSPSKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSI
QQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLA
EMQSAMNLANNQLSSQCPLETSPTQHPTPGPMGPSPPPAPVPSPLVGFSQFPQQLTPP
RSPSPEPTVEDVISQVARAHREIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWENQ
GCPPAPNDNNTLAAQRHNEALNGLRQAPSSYPPTWPPGPAHHSCHQSNSNGHRLCPTH
VYAAPEGKAPANSPRQGNSKNVLLACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREV
VEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQEL
GAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETL
LRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ"
BASE COUNT 556 a 923 c 642 g 550 t
ORIGIN
1 ctcgggcaaa aggcggctga gattggcaga gtgaaatatt actgccgagg gaacgtagca
61 gggcacacgt ctcgcctctt tgcgactcgg tgccccgttt ctccccatca cctacttact
121 tcctggttgc aacctctctt cctctgggac ttttgcaccg ggagctccag attcgccacc
181 ccgcagcgct gcggagccgg caggcagagg caccccgtac actgcagaga cccgaccctc
241 cttgctacct tctagccaga actactgcag gctgattccc cctacacact ctctctgctc
301 ttcccatgca aagcagaact ccgttgcctc aacgtccaac ccttctgcag ggctgcagtc
361 cggccacccc aagaccttgc tgcagggtgc ttcggatcct gatcgtgagt cgcggggtcc
421 actccccgcc cttagccagt gcccaggggg caacagcggc gatcgcaacc tctagtttga
481 gtcaaggtcc agtttgaatg accgctctca gctggtgaag acatgacgac cctggactcc
541 aacaacaaca caggtggcgt catcacctac attggctcca gtggctcctc cccaagccgc
601 accagccctg aatccctcta tagtgacaac tccaatggca gcttccagtc cctgacccaa
661 ggctgtccca cctacttccc accatccccc actggctccc tcacccaaga cccggctcgc
721 tcctttggga gcattccacc cagcctgagt gatgacggct ccccttcttc ctcatcttcc
781 tcgtcgtcat cctcctcctc cttctataat gggagccccc ctgggagtct acaagtggcc
841 atggaggaca gcagccgagt gtcccccagc aagagcacca gcaacatcac caagctgaat
901 ggcatggtgt tactgtgtaa agtgtgtggg gacgttgcct cgggcttcca ctacggtgtg
961 cacgcctgcg agggctgcaa gggctttttc cgtcggagca tccagcagaa catccagtac
1021 aaaaggtgtc tgaagaatga gaattgctcc atcgtccgca tcaatcgcaa ccgctgccag
1081 caatgtcgct tcaagaagtg tctctctgtg ggcatgtctc gagacgctgt gcgttttggg
1141 cgcatcccca aacgagagaa gcagcggatg cttgctgaga tgcagagtgc catgaacctg
1201 gccaacaacc agttgagcag ccagtgcccg ctggagactt cacccaccca gcaccccacc
1261 ccaggcccca tgggcccctc gccaccccct gctccggtcc cctcacccct ggtgggcttc
1321 tcccagtttc cacaacagct gacgcctccc agatccccaa gccctgagcc cacagtggag
1381 gatgtgatat cccaggtggc ccgggcccat cgagagatct tcacctacgc ccatgacaag
1441 ctgggcagct cacctggcaa cttcaatgcc aaccatgcat caggtagccc tccagccacc
1501 accccacatc gctgggaaaa tcagggctgc ccacctgccc ccaatgacaa caacaccttg
1561 gctgcccagc gtcataacga ggccctaaat ggtctgcgcc aggctccctc ctcctaccct
1621 cccacctggc ctcctggccc tgcacaccac agctgccacc agtccaacag caacgggcac
1681 cgtctatgcc ccacccacgt gtatgcagcc ccagaaggca aggcacctgc caacagtccc
1741 cggcagggca actcaaagaa tgttctgctg gcatgtccta tgaacatgta cccgcatgga
1801 cgcagtgggc gaacggtgca ggagatctgg gaggatttct ccatgagctt cacgcccgct
1861 gtgcgggagg tggtagagtt tgccaaacac atcccgggct tccgtgacct ttctcagcat
1921 gaccaagtca ccctgcttaa ggctggcacc tttgaggtgc tgatggtgcg ctttgcttcg
1981 ttgttcaacg tgaaggacca gacagtgatg ttcctaagcc gcaccaccta cagcctgcag
2041 gagcttggtg ccatgggcat gggagacctg ctcagtgcca tgttcgactt cagcgagaag
2101 ctcaactccc tggcgcttac cgaggaggag ctgggcctct tcaccgcggt ggtgcttgtc
2161 tctgcagacc gctcgggcat ggagaattcc gcttcggtgg agcagctcca ggagacgctg
2221 ctgcgggctc ttcgggctct ggtgctgaag aaccggccct tggagacttc ccgcttcacc
2281 aagctgctgc tcaagctgcc ggacctgcgg accctgaaca acatgcattc cgagaagctg
2341 ctgtccttcc gggtggacgc ccagtgaccc gcccggccgg ccttctgccg ctgccccctt
2401 gtacagaatc gaactctgca cttctctctc ctttacgaga cgaaaaggaa aagcaaacca
2461 gaatcttatt tatattgtta taaaatattc caagatgagc ctctggcccc ctgagccttc
2521 ttgtaaatac ctgcctccct cccccatcac cgaacttccc ctcctcccct atttaaacca
2581 ctctgtctcc cccacaaccc tcccctggcc ctctgatttg ttctgttcct gtctcaaatc
2641 caatagttca cagctgaaaa aaaaaaaaaa a
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