LOCUS BC053898 1891 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens homeobox C8, mRNA (cDNA clone MGC:61605 IMAGE:6171090), complete cds. ACCESSION BC053898 VERSION BC053898.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1891) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1891) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 115 Row: n Column: 8. FEATURES Location/Qualifiers source 1..1891 /db_xref="H-InvDB:HIT000054019" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:61605 IMAGE:6171090" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1891 /gene="HOXC8" /db_xref="GeneID:3224" /db_xref="HGNC:HGNC:5129" /db_xref="MIM:142970" CDS 180..908 /gene="HOXC8" /codon_start=1 /product="homeobox C8" /protein_id="AAH53898.1" /db_xref="GeneID:3224" /db_xref="HGNC:HGNC:5129" /db_xref="MIM:142970" /translation="MSSYFVNPLFSKYKAGESLEPAYYDCRFPQSVGRSHALVYGPGG SAPGFQHASHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGA QQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQ TLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARD EEKVEEEGNEEEEKEEEEKEENKD" BASE COUNT 531 a 507 c 450 g 403 t ORIGIN 1 gccgagctca gcaccgaggc gccccccaac ctgcccagcc cccagcccac cagcccagcc 61 cagtcccggg gagccagctg gcctggggtt cggtcccggg gggaggggag tttcgggggt 121 actgggcggg gtactcgtga gccagagggg agggggccgc gggttttcat gtacccagca 181 tgagctccta cttcgtcaac cccctgttct ccaaatacaa agccggcgag tccctggaac 241 cggcctatta cgactgccgg ttccctcaga gcgtgggcag gagccatgcg ctggtgtacg 301 ggcccggcgg ctcggcgccc ggcttccagc acgcttcgca ccacgttcaa gacttcttcc 361 accacggcac ctccggcatc tccaactcag gctaccagca gaacccgtgc tcgcttagct 421 gccacggaga cgcctccaaa ttctatggct acgaggcgct ccccagacag tccctttatg 481 gggctcagca agaggcgagc gtggtgcaat atcccgactg taaatcctcc gccaacacta 541 acagtagcga aggacaaggc cacttaaatc aaaactcgtc tcccagcctc atgtttccat 601 ggatgagacc ccacgctccg gggaggcgca gtggacggca aacttacagc cggtatcaga 661 ccttggaact agaaaaggag tttctcttta atccttattt gacacgaaaa cgtcggattg 721 aagtctctca tgccctggga ctgaccgaga gacaagtgaa gatctggttc cagaaccgaa 781 ggatgaagtg gaaaaaggag aacaacaagg ataaactgcc gggagcccga gatgaggaga 841 aggtggagga agaaggaaat gaggaagagg agaaagaaga ggaggaaaag gaagaaaaca 901 aggactaagc aaaaaagaaa gacccccccc ccctttagca actcccttga agtttcgttt 961 tatggtagca gataaattga gaagtttacg actgtcattt gcttttatag agaatagaat 1021 gacactcaca actctaacta cctgtcagat acttgcagct ctggttttat tacctttgga 1081 cttcccccac tctttatttg tttgggggct ggagggggga gacggagaaa cagtgaaaag 1141 ttcggactct ctgtctcact ccttgcccca cacacacttg tccctgcccc cacccttctg 1201 agtccttcct ggattttaag gtctgagacc tggcctccgt gctcctcggt ctgtctctca 1261 ccacactccc acctccctgc ttctctggta tttattttag aggggagccc cctcgaaatg 1321 cagaaaagga cttgtggttt tgtttttatg ctaaggctag tgtactagat gtactttttc 1381 taaaaaggaa aggacagaaa aaaatgaaga aaggaaagga agacaaatgt aaagaaataa 1441 ggaaaaaagc aaggaatatc ccctccccct ccccctcccc ctccccaggg ctccctgctt 1501 agaaaaaccc ccttgacttt ctctaggaac ctgatggaaa cctgaaggag atgtgggtct 1561 ttcccctccc cccatttcca gaagggtaga taggagcctg cagtcgcctc taaaatccta 1621 cctaaccatc ccatggtcac tcgggcccat gccttcctct ccttcgctgt ttgatttcta 1681 ttctgttggg cccgccttcc tctgagctgc attagtgtta gtgctcagaa atcaccataa 1741 tcacgaaaat aataataata aatctttaac atactaccta aagggaacct gcaataatct 1801 tgaaaaagaa aaagagaaaa attttaaaat cctgctatag gagaaaaaaa gagaaaaaaa 1861 taaaaataaa aaaaaaaaaa aaaaaaaaaa a //