LOCUS BC053898 1891 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox C8, mRNA (cDNA clone MGC:61605
IMAGE:6171090), complete cds.
ACCESSION BC053898
VERSION BC053898.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1891)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1891)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: n Column: 8.
FEATURES Location/Qualifiers
source 1..1891
/db_xref="H-InvDB:HIT000054019"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61605 IMAGE:6171090"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1891
/gene="HOXC8"
/db_xref="GeneID:3224"
/db_xref="HGNC:HGNC:5129"
/db_xref="MIM:142970"
CDS 180..908
/gene="HOXC8"
/codon_start=1
/product="homeobox C8"
/protein_id="AAH53898.1"
/db_xref="GeneID:3224"
/db_xref="HGNC:HGNC:5129"
/db_xref="MIM:142970"
/translation="MSSYFVNPLFSKYKAGESLEPAYYDCRFPQSVGRSHALVYGPGG
SAPGFQHASHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGA
QQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQ
TLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARD
EEKVEEEGNEEEEKEEEEKEENKD"
BASE COUNT 531 a 507 c 450 g 403 t
ORIGIN
1 gccgagctca gcaccgaggc gccccccaac ctgcccagcc cccagcccac cagcccagcc
61 cagtcccggg gagccagctg gcctggggtt cggtcccggg gggaggggag tttcgggggt
121 actgggcggg gtactcgtga gccagagggg agggggccgc gggttttcat gtacccagca
181 tgagctccta cttcgtcaac cccctgttct ccaaatacaa agccggcgag tccctggaac
241 cggcctatta cgactgccgg ttccctcaga gcgtgggcag gagccatgcg ctggtgtacg
301 ggcccggcgg ctcggcgccc ggcttccagc acgcttcgca ccacgttcaa gacttcttcc
361 accacggcac ctccggcatc tccaactcag gctaccagca gaacccgtgc tcgcttagct
421 gccacggaga cgcctccaaa ttctatggct acgaggcgct ccccagacag tccctttatg
481 gggctcagca agaggcgagc gtggtgcaat atcccgactg taaatcctcc gccaacacta
541 acagtagcga aggacaaggc cacttaaatc aaaactcgtc tcccagcctc atgtttccat
601 ggatgagacc ccacgctccg gggaggcgca gtggacggca aacttacagc cggtatcaga
661 ccttggaact agaaaaggag tttctcttta atccttattt gacacgaaaa cgtcggattg
721 aagtctctca tgccctggga ctgaccgaga gacaagtgaa gatctggttc cagaaccgaa
781 ggatgaagtg gaaaaaggag aacaacaagg ataaactgcc gggagcccga gatgaggaga
841 aggtggagga agaaggaaat gaggaagagg agaaagaaga ggaggaaaag gaagaaaaca
901 aggactaagc aaaaaagaaa gacccccccc ccctttagca actcccttga agtttcgttt
961 tatggtagca gataaattga gaagtttacg actgtcattt gcttttatag agaatagaat
1021 gacactcaca actctaacta cctgtcagat acttgcagct ctggttttat tacctttgga
1081 cttcccccac tctttatttg tttgggggct ggagggggga gacggagaaa cagtgaaaag
1141 ttcggactct ctgtctcact ccttgcccca cacacacttg tccctgcccc cacccttctg
1201 agtccttcct ggattttaag gtctgagacc tggcctccgt gctcctcggt ctgtctctca
1261 ccacactccc acctccctgc ttctctggta tttattttag aggggagccc cctcgaaatg
1321 cagaaaagga cttgtggttt tgtttttatg ctaaggctag tgtactagat gtactttttc
1381 taaaaaggaa aggacagaaa aaaatgaaga aaggaaagga agacaaatgt aaagaaataa
1441 ggaaaaaagc aaggaatatc ccctccccct ccccctcccc ctccccaggg ctccctgctt
1501 agaaaaaccc ccttgacttt ctctaggaac ctgatggaaa cctgaaggag atgtgggtct
1561 ttcccctccc cccatttcca gaagggtaga taggagcctg cagtcgcctc taaaatccta
1621 cctaaccatc ccatggtcac tcgggcccat gccttcctct ccttcgctgt ttgatttcta
1681 ttctgttggg cccgccttcc tctgagctgc attagtgtta gtgctcagaa atcaccataa
1741 tcacgaaaat aataataata aatctttaac atactaccta aagggaacct gcaataatct
1801 tgaaaaagaa aaagagaaaa attttaaaat cctgctatag gagaaaaaaa gagaaaaaaa
1861 taaaaataaa aaaaaaaaaa aaaaaaaaaa a
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