LOCUS BC053894 1528 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens homeobox C9, mRNA (cDNA clone MGC:61703 IMAGE:6144625), complete cds. ACCESSION BC053894 VERSION BC053894.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1528) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1528) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 115 Row: l Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497546. FEATURES Location/Qualifiers source 1..1528 /db_xref="H-InvDB:HIT000054015" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:61703 IMAGE:6144625" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1528 /gene="HOXC9" /db_xref="GeneID:3225" /db_xref="HGNC:HGNC:5130" /db_xref="MIM:142971" CDS 71..853 /gene="HOXC9" /codon_start=1 /product="homeobox C9" /protein_id="AAH53894.1" /db_xref="GeneID:3225" /db_xref="HGNC:HGNC:5130" /db_xref="MIM:142971" /translation="MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLV PDCSDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSG AVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSP EADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLT RDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS" BASE COUNT 387 a 440 c 404 g 297 t ORIGIN 1 gttctgtgag cagataaaaa gtacatatac agttcataca ataatcttat gtatgtaaaa 61 ccccgttacg atgtcggcga cggggcccat cagtaactat tacgtggact cgctcatctc 121 tcacgacaat gaagacctcc tagcgtccag gtttccggcc accggggctc atcccgccgc 181 cgccagaccc agcggtttgg tgccggactg tagcgatttt ccgtcctgta gcttcgcgcc 241 caagccggca gtgttcagca cgtcgtgggc gcccgtgccc tctcagtcgt ccgtggtata 301 tcacccgtac ggcccccagc cccacctcgg cgccgacacg cgctacatgc ggacttggct 361 cgagccgctg tccggcgccg tctccttccc cagcttcccg gccgggggcc gtcactacgc 421 cctcaagccg gacgcctacc ccgggcgccg cgcggactgc ggcccagggg agggccgcag 481 ctacccggac tacatgtacg gctcgcccgg ggagctgcgc gaccgcgccc cgcagacact 541 gccctcgccc gaggcggacg cgctcgccgg cagcaagcac aaagaggaga aggctgacct 601 ggaccccagc aaccccgtgg ccaactggat tcacgcccgc tccacgagga agaagcgctg 661 cccctacacc aagtaccaga cgctggaact ggagaaggag tttctcttca atatgtattt 721 aaccagggac cgtcggtatg aggtggcccg ggttctcaat ctcaccgagc ggcaggtcaa 781 aatctggttt cagaatcgaa ggatgaagat gaaaaagatg aataaagaga aaaccgacaa 841 ggagcagtcc taaaccctac ccagcctgct gcctcagcac agccaaggga aaaacaaaaa 901 ccccacaaaa taccccaaca caggcggggg agagacgaaa aagaaaagga aagagcaaga 961 tagacaaaag ccaatcagct taaaaagaaa aacaaggaag gggaaaagaa aactcttgcg 1021 atttgggagg gttcagtgtt gagatattgg tgttttagag ttagttctac ccagcgagga 1081 ggaggcgggg agagaaactg cgttctcttt ccccagcgca accgaaataa atgacacata 1141 caaatgtgat ttttttcctc ctttcttcag agaagccagt acttgaatcg ctatatttct 1201 attttttttt ccctgtatcg tatttggtcc aggtcatccc tccccgggcc tggggcgctc 1261 tgcgtgcaga ttttgtacaa aaaaaaaaaa gacacacaca catacatgat aatgattccc 1321 agcccaggag ctgaggggtg agggctgggg accatgccgc gggctgggtc gggcccgtgc 1381 aggccggcgc cttgggctgt acatagtgtt ccctctcatc cccagggttc gtccccagcg 1441 tccgtcctgt aacgtgcttc tgtttgttat ggtagaacag ccctgtgtta atatattgaa 1501 gtcacttaac cagaaaaaaa aaaaaaaa //