LOCUS BC053894 1528 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox C9, mRNA (cDNA clone MGC:61703
IMAGE:6144625), complete cds.
ACCESSION BC053894
VERSION BC053894.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1528)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1528)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497546.
FEATURES Location/Qualifiers
source 1..1528
/db_xref="H-InvDB:HIT000054015"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61703 IMAGE:6144625"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1528
/gene="HOXC9"
/db_xref="GeneID:3225"
/db_xref="HGNC:HGNC:5130"
/db_xref="MIM:142971"
CDS 71..853
/gene="HOXC9"
/codon_start=1
/product="homeobox C9"
/protein_id="AAH53894.1"
/db_xref="GeneID:3225"
/db_xref="HGNC:HGNC:5130"
/db_xref="MIM:142971"
/translation="MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLV
PDCSDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSG
AVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSP
EADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLT
RDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS"
BASE COUNT 387 a 440 c 404 g 297 t
ORIGIN
1 gttctgtgag cagataaaaa gtacatatac agttcataca ataatcttat gtatgtaaaa
61 ccccgttacg atgtcggcga cggggcccat cagtaactat tacgtggact cgctcatctc
121 tcacgacaat gaagacctcc tagcgtccag gtttccggcc accggggctc atcccgccgc
181 cgccagaccc agcggtttgg tgccggactg tagcgatttt ccgtcctgta gcttcgcgcc
241 caagccggca gtgttcagca cgtcgtgggc gcccgtgccc tctcagtcgt ccgtggtata
301 tcacccgtac ggcccccagc cccacctcgg cgccgacacg cgctacatgc ggacttggct
361 cgagccgctg tccggcgccg tctccttccc cagcttcccg gccgggggcc gtcactacgc
421 cctcaagccg gacgcctacc ccgggcgccg cgcggactgc ggcccagggg agggccgcag
481 ctacccggac tacatgtacg gctcgcccgg ggagctgcgc gaccgcgccc cgcagacact
541 gccctcgccc gaggcggacg cgctcgccgg cagcaagcac aaagaggaga aggctgacct
601 ggaccccagc aaccccgtgg ccaactggat tcacgcccgc tccacgagga agaagcgctg
661 cccctacacc aagtaccaga cgctggaact ggagaaggag tttctcttca atatgtattt
721 aaccagggac cgtcggtatg aggtggcccg ggttctcaat ctcaccgagc ggcaggtcaa
781 aatctggttt cagaatcgaa ggatgaagat gaaaaagatg aataaagaga aaaccgacaa
841 ggagcagtcc taaaccctac ccagcctgct gcctcagcac agccaaggga aaaacaaaaa
901 ccccacaaaa taccccaaca caggcggggg agagacgaaa aagaaaagga aagagcaaga
961 tagacaaaag ccaatcagct taaaaagaaa aacaaggaag gggaaaagaa aactcttgcg
1021 atttgggagg gttcagtgtt gagatattgg tgttttagag ttagttctac ccagcgagga
1081 ggaggcgggg agagaaactg cgttctcttt ccccagcgca accgaaataa atgacacata
1141 caaatgtgat ttttttcctc ctttcttcag agaagccagt acttgaatcg ctatatttct
1201 attttttttt ccctgtatcg tatttggtcc aggtcatccc tccccgggcc tggggcgctc
1261 tgcgtgcaga ttttgtacaa aaaaaaaaaa gacacacaca catacatgat aatgattccc
1321 agcccaggag ctgaggggtg agggctgggg accatgccgc gggctgggtc gggcccgtgc
1381 aggccggcgc cttgggctgt acatagtgtt ccctctcatc cccagggttc gtccccagcg
1441 tccgtcctgt aacgtgcttc tgtttgttat ggtagaacag ccctgtgtta atatattgaa
1501 gtcacttaac cagaaaaaaa aaaaaaaa
//