LOCUS BC053893 3669 bp mRNA linear HUM 11-APR-2007 DEFINITION Homo sapiens jumonji, AT rich interactive domain 1A, mRNA (cDNA clone IMAGE:6144764), partial cds. ACCESSION BC053893 VERSION BC053893.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3669) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3669) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 115 Row: l Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4826967. FEATURES Location/Qualifiers source 1..3669 /db_xref="H-InvDB:HIT000259367" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6144764" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..>3669 /gene="JARID1A" /gene_synonym="RBP2" /db_xref="GeneID:5927" /db_xref="HGNC:HGNC:9886" /db_xref="MIM:180202" CDS 363..>3669 /gene="JARID1A" /gene_synonym="RBP2" /codon_start=1 /product="JARID1A protein" /protein_id="AAH53893.1" /db_xref="GeneID:5927" /db_xref="HGNC:HGNC:9886" /db_xref="MIM:180202" /translation="MAGVGPGGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAE KTGICKIRPPKDWQPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQG STLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKS HYERILYPYELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRT RRVKTQSESGDVSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFN MQMRQRKGTLSVNFVDLYVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGD WRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADNFKSDYFNMPVHMVPTELVEK EFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPV LEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPS HAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTF PRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRRHCVFSHEELIFKMAADP ECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVLMSEEEVFELVPDDERQCSACRTT CFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDLPSLLYGVKVRAQSYD TWVSRVTEALSANFNHKKDLIELRVMLEDAEDRKYPENDLFRKLRDAVKEAETCASVA QLLLSKKQKHRQSPDSGRTRTKLTVEELKAFVQQLFSLPCVISQARQVKNLLDDVEEF HERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDEVRLTLSDP QQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQARPRHSVA SLESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYLEQLESLSAKG RPIPVRLEALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPRTDIGVYGSGKN RRKKVKELIEKKKK" BASE COUNT 1022 a 768 c 984 g 895 t ORIGIN 1 gcagaacttt ggcgggcaag gagacaaaca gccacactgt gctgccgggg aagagaagaa 61 gaaggaaagg ccagacacac aggcgtcgtg cagctgcgga aggattccgt ttcctgcagg 121 gggcggaggg atttgacagc acggtaactt ccggaaaagt cctgaacctc agtggaaaag 181 ccttgcaaga aacaataaca aacgggagga ggaagcgatt ctggggtttc tgtgttgaac 241 ggttcttgtc cgcgaagatg cgcttcggcc tctgtcaggg gacttgaacg ggcttagtgg 301 gcttcagcca gcttttctcc accggttccc cacggggacc cccccccccc ccggccgttg 361 caatggcggg cgtggggccg gggggctacg cggcggagtt cgtgccaccg ccagagtgcc 421 ccgtctttga gccgagttgg gaggagttca cagatccgct cagctttatc ggccgcatcc 481 ggcctttggc ggagaaaacc ggcatctgca aaattcggcc gcccaaggac tggcagcctc 541 catttgcctg tgaagtaaaa agctttcgtt tcactccaag agtccagcgc ctgaatgaac 601 ttgaggcaat gaccagagtg agattggatt tcttggatca actagcaaaa ttttgggaac 661 ttcaaggatc tactctgaag atccctgtgg tagagagaaa aatcctggat ctgtatgctt 721 tgagcaagat tgttgccagc aaaggaggtt ttgaaatggt caccaaagag aagaaatggt 781 ctaaagtggg tagtcgcttg ggatatctgc caggaaaagg aactgggtct cttttgaagt 841 cacattatga aagaattctc tacccatatg agcttttcca gtctggtgtg agccttatgg 901 gtgtgcagat gcctaattta gatcttaaag aaaaagtgga gcctgaggtt ctcagcactg 961 atacccaaac ttccccagag ccaggcacaa ggatgaacat tctgccgaag agaacaagac 1021 gtgtgaagac tcagtcagaa tctggagatg tgagtagaaa cacggaactg aagaaacttc 1081 agatttttgg ggctgggccc aaggttgtgg gcttggcaat gggaacaaaa gataaagaag 1141 atgaggtcac ccgaagacga aaagttacca acaggtcaga cgcatttaac atgcaaatga 1201 gacaacggaa aggcactctc tctgttaact ttgttgatct ctatgtttgt atgttttgtg 1261 gtcggggaaa caatgaagat aaattgcttt tgtgtgatgg atgtgatgac agctatcata 1321 cattttgtct aattcctcca ctacctgatg tgcccaaagg agactggagg tgtcctaaat 1381 gtgtcgccga ggaatgtagc aaacctcgag aagcctttgg atttgaacaa gctgtacgag 1441 agtatacact tcagagcttt ggagagatgg cagataattt taagtctgat tattttaata 1501 tgccagtcca tatggttccc acagaactag tagaaaagga attttggcgg ctggtaagca 1561 gcattgaaga agatgttatt gtggaatatg gagcagatat ctcctcaaaa gactttggaa 1621 gtggatttcc ggtgaaggat gggcggagaa agattctgcc agaagaagag gaatatgcac 1681 tttctggttg gaatttgaat aacatgcctg tcctggaaca gtctgttctt gcacatatta 1741 atgtggacat ctctggtatg aaagtgccgt ggctctatgt gggaatgtgc ttctcttctt 1801 tttgctggca cattgaggat cactggagtt attccatcaa ctacttgcac tggggggagc 1861 caaagacatg gtatggtgtg ccatctcatg ctgcagagca actggaggag gtgatgagag 1921 agctggcccc cgagttattt gaatcccagc ctgatcttct gcatcagtta gttaccatca 1981 tgaaccccaa cgtgctaatg gagcatggtg tgcctgtgta caggaccaat cagtgtgctg 2041 gcgagtttgt tgtgacattt cctcgtgcct atcactctgg atttaaccag ggctacaact 2101 ttgctgaagc tgtgaacttc tgtactgctg actggttgcc cattggacgt caatgtgtaa 2161 atcattaccg acgcctaagg cgccactgtg tcttttcaca cgaggaacta attttcaaga 2221 tggcagcaga tccagaatgc ttagatgtgg ggctggctgc catggtctgc aaagaattga 2281 ctctcatgac tgaagaagaa acacgattaa gagagtctgt tgtacagatg ggtgtcctga 2341 tgtcagaaga agaagtgttt gaacttgttc ctgatgatga gcggcagtgt tcagcatgca 2401 gaaccacatg ttttctctct gctctcacat gttcctgtaa tcctgagcgg cttgtatgtc 2461 tctaccatcc aactgatctg tgcccctgcc ccatgcagaa gaaatgtctt agatatcgct 2521 acccattaga agacctccct tctctgctat atggtgtaaa agtcagggca cagtcctatg 2581 acacttgggt cagtcgtgtt acagaagcat tgtctgctaa cttcaaccac aaaaaagatt 2641 tgattgaatt gcgagtaatg ctggaagatg ctgaggatag gaaataccca gagaatgatc 2701 tctttcgaaa actcagggat gctgtaaaag aagctgagac ctgtgcttct gtggctcagc 2761 tgcttctgag caaaaagcag aaacacagac agagcccaga tagtgggagg actcggacca 2821 aactgacagt ggaagaattg aaggcctttg tccaacaact ttttagtctt ccgtgtgtca 2881 tcagccaagc tcggcaagta aagaatctgc tagatgatgt ggaagagttt catgaacgtg 2941 ctcaggaggc catgatggat gaaaccccag attcttccaa actccagatg ttgatagata 3001 tgggctctag tctctatgtg gaactccctg aattaccacg actgaagcaa gagctacaac 3061 aggctcggtg gttggacgaa gtaagactga ccttatcaga tccgcaacaa gtcactttgg 3121 atgtcatgaa gaagctgata gactctgggg tagggttggc accccaccat gctgtggaga 3181 aagcaatggc tgaactacag gagctcctta cagtctctga acgatgggaa gaaaaggcta 3241 aggtctgcct acaggcaaga ccgaggcaca gtgtggcaag tttagaaagc attgtgaatg 3301 aagccaagaa cattccagcc tttctaccca atgtgttgtc cttgaaagaa gccttacaaa 3361 aggctcgaga atggaccgct aaagtggaag ctattcagag tggcagcaat tacgcttatt 3421 tggagcagct tgagagcttg tctgcgaaag gacgccctat tcctgtgcgt cttgaagcac 3481 tgccgcaagt ggaatcacag gtagcagcag cacgggcatg gagagaacgg actgggcgga 3541 cgtttcttaa gaagaattct agccatacat tgttacaggt gctgagcccc cggaccgaca 3601 ttggtgtata tgggagtggc aaaaatagga ggaaaaaagt aaaagaacta atagaaaaaa 3661 aaaaaaaaa //