LOCUS BC053893 3669 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens jumonji, AT rich interactive domain 1A, mRNA (cDNA
clone IMAGE:6144764), partial cds.
ACCESSION BC053893
VERSION BC053893.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3669)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3669)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: l Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4826967.
FEATURES Location/Qualifiers
source 1..3669
/db_xref="H-InvDB:HIT000259367"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6144764"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>3669
/gene="JARID1A"
/gene_synonym="RBP2"
/db_xref="GeneID:5927"
/db_xref="HGNC:HGNC:9886"
/db_xref="MIM:180202"
CDS 363..>3669
/gene="JARID1A"
/gene_synonym="RBP2"
/codon_start=1
/product="JARID1A protein"
/protein_id="AAH53893.1"
/db_xref="GeneID:5927"
/db_xref="HGNC:HGNC:9886"
/db_xref="MIM:180202"
/translation="MAGVGPGGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAE
KTGICKIRPPKDWQPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQG
STLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKS
HYERILYPYELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRT
RRVKTQSESGDVSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFN
MQMRQRKGTLSVNFVDLYVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGD
WRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADNFKSDYFNMPVHMVPTELVEK
EFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPV
LEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPS
HAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTF
PRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRRHCVFSHEELIFKMAADP
ECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVLMSEEEVFELVPDDERQCSACRTT
CFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDLPSLLYGVKVRAQSYD
TWVSRVTEALSANFNHKKDLIELRVMLEDAEDRKYPENDLFRKLRDAVKEAETCASVA
QLLLSKKQKHRQSPDSGRTRTKLTVEELKAFVQQLFSLPCVISQARQVKNLLDDVEEF
HERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDEVRLTLSDP
QQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQARPRHSVA
SLESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYLEQLESLSAKG
RPIPVRLEALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPRTDIGVYGSGKN
RRKKVKELIEKKKK"
BASE COUNT 1022 a 768 c 984 g 895 t
ORIGIN
1 gcagaacttt ggcgggcaag gagacaaaca gccacactgt gctgccgggg aagagaagaa
61 gaaggaaagg ccagacacac aggcgtcgtg cagctgcgga aggattccgt ttcctgcagg
121 gggcggaggg atttgacagc acggtaactt ccggaaaagt cctgaacctc agtggaaaag
181 ccttgcaaga aacaataaca aacgggagga ggaagcgatt ctggggtttc tgtgttgaac
241 ggttcttgtc cgcgaagatg cgcttcggcc tctgtcaggg gacttgaacg ggcttagtgg
301 gcttcagcca gcttttctcc accggttccc cacggggacc cccccccccc ccggccgttg
361 caatggcggg cgtggggccg gggggctacg cggcggagtt cgtgccaccg ccagagtgcc
421 ccgtctttga gccgagttgg gaggagttca cagatccgct cagctttatc ggccgcatcc
481 ggcctttggc ggagaaaacc ggcatctgca aaattcggcc gcccaaggac tggcagcctc
541 catttgcctg tgaagtaaaa agctttcgtt tcactccaag agtccagcgc ctgaatgaac
601 ttgaggcaat gaccagagtg agattggatt tcttggatca actagcaaaa ttttgggaac
661 ttcaaggatc tactctgaag atccctgtgg tagagagaaa aatcctggat ctgtatgctt
721 tgagcaagat tgttgccagc aaaggaggtt ttgaaatggt caccaaagag aagaaatggt
781 ctaaagtggg tagtcgcttg ggatatctgc caggaaaagg aactgggtct cttttgaagt
841 cacattatga aagaattctc tacccatatg agcttttcca gtctggtgtg agccttatgg
901 gtgtgcagat gcctaattta gatcttaaag aaaaagtgga gcctgaggtt ctcagcactg
961 atacccaaac ttccccagag ccaggcacaa ggatgaacat tctgccgaag agaacaagac
1021 gtgtgaagac tcagtcagaa tctggagatg tgagtagaaa cacggaactg aagaaacttc
1081 agatttttgg ggctgggccc aaggttgtgg gcttggcaat gggaacaaaa gataaagaag
1141 atgaggtcac ccgaagacga aaagttacca acaggtcaga cgcatttaac atgcaaatga
1201 gacaacggaa aggcactctc tctgttaact ttgttgatct ctatgtttgt atgttttgtg
1261 gtcggggaaa caatgaagat aaattgcttt tgtgtgatgg atgtgatgac agctatcata
1321 cattttgtct aattcctcca ctacctgatg tgcccaaagg agactggagg tgtcctaaat
1381 gtgtcgccga ggaatgtagc aaacctcgag aagcctttgg atttgaacaa gctgtacgag
1441 agtatacact tcagagcttt ggagagatgg cagataattt taagtctgat tattttaata
1501 tgccagtcca tatggttccc acagaactag tagaaaagga attttggcgg ctggtaagca
1561 gcattgaaga agatgttatt gtggaatatg gagcagatat ctcctcaaaa gactttggaa
1621 gtggatttcc ggtgaaggat gggcggagaa agattctgcc agaagaagag gaatatgcac
1681 tttctggttg gaatttgaat aacatgcctg tcctggaaca gtctgttctt gcacatatta
1741 atgtggacat ctctggtatg aaagtgccgt ggctctatgt gggaatgtgc ttctcttctt
1801 tttgctggca cattgaggat cactggagtt attccatcaa ctacttgcac tggggggagc
1861 caaagacatg gtatggtgtg ccatctcatg ctgcagagca actggaggag gtgatgagag
1921 agctggcccc cgagttattt gaatcccagc ctgatcttct gcatcagtta gttaccatca
1981 tgaaccccaa cgtgctaatg gagcatggtg tgcctgtgta caggaccaat cagtgtgctg
2041 gcgagtttgt tgtgacattt cctcgtgcct atcactctgg atttaaccag ggctacaact
2101 ttgctgaagc tgtgaacttc tgtactgctg actggttgcc cattggacgt caatgtgtaa
2161 atcattaccg acgcctaagg cgccactgtg tcttttcaca cgaggaacta attttcaaga
2221 tggcagcaga tccagaatgc ttagatgtgg ggctggctgc catggtctgc aaagaattga
2281 ctctcatgac tgaagaagaa acacgattaa gagagtctgt tgtacagatg ggtgtcctga
2341 tgtcagaaga agaagtgttt gaacttgttc ctgatgatga gcggcagtgt tcagcatgca
2401 gaaccacatg ttttctctct gctctcacat gttcctgtaa tcctgagcgg cttgtatgtc
2461 tctaccatcc aactgatctg tgcccctgcc ccatgcagaa gaaatgtctt agatatcgct
2521 acccattaga agacctccct tctctgctat atggtgtaaa agtcagggca cagtcctatg
2581 acacttgggt cagtcgtgtt acagaagcat tgtctgctaa cttcaaccac aaaaaagatt
2641 tgattgaatt gcgagtaatg ctggaagatg ctgaggatag gaaataccca gagaatgatc
2701 tctttcgaaa actcagggat gctgtaaaag aagctgagac ctgtgcttct gtggctcagc
2761 tgcttctgag caaaaagcag aaacacagac agagcccaga tagtgggagg actcggacca
2821 aactgacagt ggaagaattg aaggcctttg tccaacaact ttttagtctt ccgtgtgtca
2881 tcagccaagc tcggcaagta aagaatctgc tagatgatgt ggaagagttt catgaacgtg
2941 ctcaggaggc catgatggat gaaaccccag attcttccaa actccagatg ttgatagata
3001 tgggctctag tctctatgtg gaactccctg aattaccacg actgaagcaa gagctacaac
3061 aggctcggtg gttggacgaa gtaagactga ccttatcaga tccgcaacaa gtcactttgg
3121 atgtcatgaa gaagctgata gactctgggg tagggttggc accccaccat gctgtggaga
3181 aagcaatggc tgaactacag gagctcctta cagtctctga acgatgggaa gaaaaggcta
3241 aggtctgcct acaggcaaga ccgaggcaca gtgtggcaag tttagaaagc attgtgaatg
3301 aagccaagaa cattccagcc tttctaccca atgtgttgtc cttgaaagaa gccttacaaa
3361 aggctcgaga atggaccgct aaagtggaag ctattcagag tggcagcaat tacgcttatt
3421 tggagcagct tgagagcttg tctgcgaaag gacgccctat tcctgtgcgt cttgaagcac
3481 tgccgcaagt ggaatcacag gtagcagcag cacgggcatg gagagaacgg actgggcgga
3541 cgtttcttaa gaagaattct agccatacat tgttacaggt gctgagcccc cggaccgaca
3601 ttggtgtata tgggagtggc aaaaatagga ggaaaaaagt aaaagaacta atagaaaaaa
3661 aaaaaaaaa
//