LOCUS BC053671 5668 bp mRNA linear HUM 06-JUN-2006 DEFINITION Homo sapiens SH3 domain containing ring finger 1, mRNA (cDNA clone MGC:61566 IMAGE:6144754), complete cds. ACCESSION BC053671 VERSION BC053671.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5668) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5668) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (09-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 115 Row: l Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 51988886. FEATURES Location/Qualifiers source 1..5668 /db_xref="H-InvDB:HIT000053972_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:61566 IMAGE:6144754" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..5668 /gene="SH3RF1" /gene_synonym="KIAA1494" /gene_synonym="POSH" /gene_synonym="RNF142" /db_xref="GeneID:57630" /db_xref="HGNC:HGNC:17650" CDS 174..3344 /gene="SH3RF1" /gene_synonym="KIAA1494" /gene_synonym="POSH" /gene_synonym="RNF142" /codon_start=1 /product="SH3RF1 protein" /protein_id="AAH53671.1" /db_xref="GeneID:57630" /db_xref="HGNC:HGNC:17650" /translation="MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR NELRCPECRTLVGSGVEELPSNILLVRLLDGIKQRPWKPGPGGGSGTNCTNALRSQSS TVANCSSKDLQSSQGGQQPRVQSWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDI IILRRQVDENWYHGEVNGIHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDC LPFAKDDVLTVIRRVDENWAEGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGVDA GECSSAAAQSSTAPKHSWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQ VDENWYHGEVNGIHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFAKD DVLTVIRRVDENWAEGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGVDAGECSSA AAQSSTAPKHSDTKKNTKKRHSFTSLTMANKSSQASQNRHSMEISPPVLISSSNPTAA ARISELSGLSCSAPSQVHISTTGLIVTPPPSSPVTTGPSFTFPSDVPYQAALGTLNPP LPPPPLLAATVLASTPPGATAAAAAAGMGPRPMAGSTDQIAHLRPQTRPSVYVAIYPY TPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAPVTRAVTNASQA KVPMSTAGQTSRGVTMVSPSTAGGPAQKLQGNGVAGSPSVVPAAVVSAAHIQTSPQAK VLLHMTGQMTVNQARNAVRTVAAHNQERPTAAVTPIQVQNAAGLSPASVGLSHHSLAS PQPAPLMPGSATHTAAISISRASAPLACAAAAPLTSPSITSASLEAEPSGRIVTVLPG LPTSPDSASSACGNSSATKPDKDSKKEKKGLLKLLSGASTKRKPRVSPPASPTLEVEL GSAELPLQGAVGPELPPGGGHGRAGSCPVDGDGPVTTAVAGAALAQDAFHRKASSLDS AVPIAPPPRQACSSLGPVLNESRPVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKR EDGWFKGTLQRNGKTGLFPGSFVENI" BASE COUNT 1566 a 1273 c 1328 g 1501 t ORIGIN 1 gcgcggtggg gccgcatctg catcagccgc cgcagccgct gcggggccgc gaacaaagag 61 gaggagccga ggcgcgagag caaagtctga aatggatgtt acatgagtca ttttaaggga 121 tgcacacaac tatgaacatt tctgaagatt ttttctcagt aaagtagata aagatggatg 181 aatcagcctt gttggatctt ttggagtgtc cggtgtgtct agagcgcctt gatgcttctg 241 cgaaggtctt gccttgccag catacgtttt gcaagcgatg tttgctgggg atcgtaggtt 301 ctcgaaatga actcagatgt cccgagtgca ggactcttgt tggctcgggt gtcgaggagc 361 ttcccagtaa catcttgctg gtcagacttc tggatggcat caaacagagg ccttggaaac 421 ctggtcctgg tgggggaagt gggaccaact gcacaaatgc attaaggtct cagagcagca 481 ctgtggctaa ttgtagctca aaagatctgc agagctccca gggcggacag cagcctcggg 541 tgcaatcctg gagcccccca gtgaggggta tacctcagtt accatgtgcc aaagcattat 601 acaactatga aggaaaagag cctggagacc ttaaattcag caaaggtgac atcatcattt 661 tgcgaagaca agtggatgaa aattggtacc atggggaagt caatggaatc catggctttt 721 tccccaccaa ctttgtgcag attattaaac cgttacctca gcccccacct cagtgcaaag 781 cactttatga ctttgaagtg aaagacaagg aagcagacaa agattgcctt ccatttgcaa 841 aggatgatgt tctgactgtg atccgaagag tggatgaaaa ctgggctgaa ggaatgctgg 901 cagacaaaat aggaatattt ccaatttcat atgttgagtt taactcggct gctaagcagc 961 tgatagaatg ggataagcct cctgtgccag gagttgatgc tggagaatgt tcctcggcag 1021 cagcccagag cagcactgcc ccaaagcact cctggagccc cccagtgagg ggtatacctc 1081 agttaccatg tgccaaagca ttatacaact atgaaggaaa agagcctgga gaccttaaat 1141 tcagcaaagg tgacatcatc attttgcgaa gacaagtgga tgaaaattgg taccatgggg 1201 aagtcaatgg aatccatggc tttttcccca ccaactttgt gcagattatt aaaccgttac 1261 ctcagccccc acctcagtgc aaagcacttt atgactttga agtgaaagac aaggaagcag 1321 acaaagattg ccttccattt gcaaaggatg atgttctgac tgtgatccga agagtggatg 1381 aaaactgggc tgaaggaatg ctggcagaca aaataggaat atttccaatt tcatatgttg 1441 agtttaactc ggctgctaag cagctgatag aatgggataa gcctcctgtg ccaggagttg 1501 atgctggaga atgttcctcg gcagcagccc agagcagcac tgccccaaag cactccgaca 1561 ccaagaagaa caccaaaaag cggcactcct tcacttccct cactatggcc aacaagtcct 1621 cccaggcatc ccagaaccgc cactccatgg agatcagccc ccctgtcctc atcagctcca 1681 gcaaccccac tgctgctgca cggatcagcg agctgtctgg gctctcctgc agtgcccctt 1741 ctcaggttca tataagtacc accgggttaa ttgtgacccc gcccccaagc agcccagtga 1801 caactggccc ctcgtttact ttcccatcag atgttcccta ccaagctgcc cttggaactt 1861 tgaatcctcc tcttccacca ccccctctcc tggctgccac tgtccttgcc tccacaccac 1921 caggcgccac cgccgctgct gctgctgctg gaatgggacc gaggcccatg gcaggatcca 1981 ctgaccagat tgcacattta cggccgcaga ctcgccccag tgtgtatgtt gctatatatc 2041 catacactcc tcggaaagag gatgaactag agctgagaaa aggggagatg tttttagtgt 2101 ttgagcgctg ccaggatggc tggttcaaag ggacatccat gcataccagc aagatagggg 2161 ttttccctgg caattatgtg gcaccagtca caagggcggt gacaaatgct tcccaagcta 2221 aagtccctat gtctacagct ggccagacaa gtcggggagt gaccatggtc agtccttcca 2281 cggcaggagg gcctgcccag aagctccagg gaaatggcgt ggctgggagt cccagtgttg 2341 tccccgcagc tgtggtatca gcagctcaca tccagacaag tcctcaggct aaggtcttgt 2401 tgcacatgac ggggcaaatg acagtcaacc aggcccgcaa tgctgtgagg acagttgcag 2461 cgcacaacca ggaacgcccc acggcagcag tgacacccat ccaggtacag aatgccgccg 2521 gcctcagccc tgcatctgtg ggcctgtccc atcactcgct ggcctcccca caacctgcgc 2581 ctctgatgcc aggctcagcc acgcacactg ctgccatcag tatcagtcga gccagtgccc 2641 ctctggcctg tgcagcagct gctccactga cttccccaag catcaccagt gcttctctgg 2701 aggctgagcc cagtggccgg atagtgaccg ttctccctgg actccccaca tctcctgaca 2761 gtgcttcatc agcttgtggg aacagttcag caaccaaacc agacaaggat agcaaaaaag 2821 aaaaaaaggg tttgttgaag ttgctttctg gcgcctccac taaacggaag ccccgcgtgt 2881 ctcctccagc atcgcccacc ctagaagtgg agctgggcag tgcagagctt cctctccagg 2941 gagcggtggg gcccgaactg ccaccaggag gtggccatgg cagggcaggc tcctgccctg 3001 tggacgggga cggaccggtc acgactgcag tggcaggagc agccctggcc caggatgctt 3061 ttcataggaa ggcaagttcc ctggactccg cagttcccat cgctccacct cctcgccagg 3121 cctgttcctc cctgggtcct gtcttgaatg agtctagacc tgtcgtttgt gaaaggcaca 3181 gggtggtggt ttcctatcct cctcagagtg aggcagaact tgaacttaaa gaaggagata 3241 ttgtgtttgt tcataaaaaa cgagaggatg gctggttcaa aggcacatta caacgtaatg 3301 ggaaaactgg ccttttccca ggaagctttg tggaaaacat atgaggagac tgacactgaa 3361 gaagcttaaa atcacttcac acaacaaagt agcacaaagc agtttaacag aaagagcaca 3421 tttgtggact tccagatggt caggagatga gcaaaggatt ggtatgtgac tctgatgccc 3481 cagcacagtt accccagcga gcagagtgaa gaagatgttt gtgtgggttt tgttagtctg 3541 gattcggatg tataaggtgt gccttgtact gtctgattta ctacacagag aaactttttt 3601 ttttttttta agatatatga ctaaaatgga caattgttta caaggcttaa ctaatttatt 3661 tgctttttta aacttgaact tttcgtataa tagatacgtt ctttggatta tgattttaag 3721 aaattattaa tttatgaaat gataggtaag gagaagctgg attatctcct gttgagagca 3781 agagattcgt tttgacatag agtgaatgca ttttcccctc tcctcctccc tgctaccatt 3841 atattttggg gttatgtttt gcttctttaa gatagaaatc ccagttctct aatttggttt 3901 tcttctttgg gaaaccaaac atacaaatga atcagtatca attagggcct ggggtagaga 3961 gacagaaact tgagagaaga gaagttagtg attccctctc tttctagttt ggtaggaatc 4021 accctgaaga cctagtcctc aatttaattg tgtgggtttt taattttcct agaatgaagt 4081 gactgaaaca atgagaaaga atacagcaca acccttgaac aaaatgtatt tagaaatata 4141 tttagtttta tagcagaagc agctcaattg tttggttgga aagtagggga aattgaagtt 4201 gtagtcactg tctgagaatg gctatgaagc gtcatttcac attttacccc aactgacctg 4261 catgcccagg acacaagtaa aacatttgtg agatagtggt ggtaagtgat gcactcgtgt 4321 taagtcaaag gctataagaa acactgtgaa aagttcatat tcatccattg tgattctttc 4381 cccacgtctt gcatgtatta ctggattccc acagtaatat agactgtgca tggtgtgtat 4441 atttcattgc gatttcctgt taagatgagt ttgtactcag aattgaccaa ttcaggaggt 4501 gtaaaaataa acagtgttct cttctctacc ccaaagccac tactgaccaa ggtctcttca 4561 gtgcactcgc tccctctctg gctaaggcat gcattagcca ctacacaagt cattagtgaa 4621 agtggtcttt tatgtcctcc cagcagacag acatcaagga tgagttaacc aggagactac 4681 tcctgtgact gtggagctct ggaaggcttg gtgggagtga atttgcccac accttacaat 4741 tgtggcagga tccagaagag cctgtctttt tatatccatt ccttgatgtc attggcctct 4801 cccaccgatt tcattacggt gccacgcagt catggatctg ggtagtccgg aaaacaaaag 4861 gagggaagac agcctggtaa tgaataagat ccttaccaca gttttctcat gggaaataca 4921 taataaaccc tttcatcttt tttttttcct ttaagaatta aaactgggaa atagaaacat 4981 gaactgaaaa gtcttgcaat gacaagaggt ttcatggtct taaaaagata ctttatgtgg 5041 ttgaagatga aatcattcct aaattaacct ttttttaaaa aaaaaacaat gtatattatg 5101 ttcctgtgtg ttgaatttaa aaaaaaaaat actttacttg gatattcatg taatatataa 5161 aggtttggtg aaatgaactt tagttaggaa aaagctggca tcagctttca tctgtgtaag 5221 ttgacaccaa tgtgtcataa tattctttat tttgggaaat tagtgtattt tataaaaatt 5281 ttaaaaagaa aaaagactac tacaggttaa gataattttt ttacctgtct tttctccata 5341 ttttaagcta tgtgatttga agtacctctg ttcatagttt cctggtataa agttggttaa 5401 aatttcatct gttaatagat cattaggtaa tataatgtat gggttttcta ttggtttttt 5461 gcagacagta gagggagatt ttgtaacaag ggcttgttac acagtgatat ggtaatgata 5521 aaattgcaat ttatcactcc ttttcatgtt aataatttga ggactggata aaaggtttca 5581 agattaaaat ttgatgttca aacctttgta tgtcccttgt gtcagtcctt aaaattttgc 5641 tttttaaaaa aacaaaaaaa aaaaaaaa //