LOCUS BC053671 5668 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens SH3 domain containing ring finger 1, mRNA (cDNA clone
MGC:61566 IMAGE:6144754), complete cds.
ACCESSION BC053671
VERSION BC053671.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5668)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5668)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: l Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51988886.
FEATURES Location/Qualifiers
source 1..5668
/db_xref="H-InvDB:HIT000053972_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61566 IMAGE:6144754"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5668
/gene="SH3RF1"
/gene_synonym="KIAA1494"
/gene_synonym="POSH"
/gene_synonym="RNF142"
/db_xref="GeneID:57630"
/db_xref="HGNC:HGNC:17650"
CDS 174..3344
/gene="SH3RF1"
/gene_synonym="KIAA1494"
/gene_synonym="POSH"
/gene_synonym="RNF142"
/codon_start=1
/product="SH3RF1 protein"
/protein_id="AAH53671.1"
/db_xref="GeneID:57630"
/db_xref="HGNC:HGNC:17650"
/translation="MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSR
NELRCPECRTLVGSGVEELPSNILLVRLLDGIKQRPWKPGPGGGSGTNCTNALRSQSS
TVANCSSKDLQSSQGGQQPRVQSWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDI
IILRRQVDENWYHGEVNGIHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDC
LPFAKDDVLTVIRRVDENWAEGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGVDA
GECSSAAAQSSTAPKHSWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQ
VDENWYHGEVNGIHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFAKD
DVLTVIRRVDENWAEGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGVDAGECSSA
AAQSSTAPKHSDTKKNTKKRHSFTSLTMANKSSQASQNRHSMEISPPVLISSSNPTAA
ARISELSGLSCSAPSQVHISTTGLIVTPPPSSPVTTGPSFTFPSDVPYQAALGTLNPP
LPPPPLLAATVLASTPPGATAAAAAAGMGPRPMAGSTDQIAHLRPQTRPSVYVAIYPY
TPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAPVTRAVTNASQA
KVPMSTAGQTSRGVTMVSPSTAGGPAQKLQGNGVAGSPSVVPAAVVSAAHIQTSPQAK
VLLHMTGQMTVNQARNAVRTVAAHNQERPTAAVTPIQVQNAAGLSPASVGLSHHSLAS
PQPAPLMPGSATHTAAISISRASAPLACAAAAPLTSPSITSASLEAEPSGRIVTVLPG
LPTSPDSASSACGNSSATKPDKDSKKEKKGLLKLLSGASTKRKPRVSPPASPTLEVEL
GSAELPLQGAVGPELPPGGGHGRAGSCPVDGDGPVTTAVAGAALAQDAFHRKASSLDS
AVPIAPPPRQACSSLGPVLNESRPVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKR
EDGWFKGTLQRNGKTGLFPGSFVENI"
BASE COUNT 1566 a 1273 c 1328 g 1501 t
ORIGIN
1 gcgcggtggg gccgcatctg catcagccgc cgcagccgct gcggggccgc gaacaaagag
61 gaggagccga ggcgcgagag caaagtctga aatggatgtt acatgagtca ttttaaggga
121 tgcacacaac tatgaacatt tctgaagatt ttttctcagt aaagtagata aagatggatg
181 aatcagcctt gttggatctt ttggagtgtc cggtgtgtct agagcgcctt gatgcttctg
241 cgaaggtctt gccttgccag catacgtttt gcaagcgatg tttgctgggg atcgtaggtt
301 ctcgaaatga actcagatgt cccgagtgca ggactcttgt tggctcgggt gtcgaggagc
361 ttcccagtaa catcttgctg gtcagacttc tggatggcat caaacagagg ccttggaaac
421 ctggtcctgg tgggggaagt gggaccaact gcacaaatgc attaaggtct cagagcagca
481 ctgtggctaa ttgtagctca aaagatctgc agagctccca gggcggacag cagcctcggg
541 tgcaatcctg gagcccccca gtgaggggta tacctcagtt accatgtgcc aaagcattat
601 acaactatga aggaaaagag cctggagacc ttaaattcag caaaggtgac atcatcattt
661 tgcgaagaca agtggatgaa aattggtacc atggggaagt caatggaatc catggctttt
721 tccccaccaa ctttgtgcag attattaaac cgttacctca gcccccacct cagtgcaaag
781 cactttatga ctttgaagtg aaagacaagg aagcagacaa agattgcctt ccatttgcaa
841 aggatgatgt tctgactgtg atccgaagag tggatgaaaa ctgggctgaa ggaatgctgg
901 cagacaaaat aggaatattt ccaatttcat atgttgagtt taactcggct gctaagcagc
961 tgatagaatg ggataagcct cctgtgccag gagttgatgc tggagaatgt tcctcggcag
1021 cagcccagag cagcactgcc ccaaagcact cctggagccc cccagtgagg ggtatacctc
1081 agttaccatg tgccaaagca ttatacaact atgaaggaaa agagcctgga gaccttaaat
1141 tcagcaaagg tgacatcatc attttgcgaa gacaagtgga tgaaaattgg taccatgggg
1201 aagtcaatgg aatccatggc tttttcccca ccaactttgt gcagattatt aaaccgttac
1261 ctcagccccc acctcagtgc aaagcacttt atgactttga agtgaaagac aaggaagcag
1321 acaaagattg ccttccattt gcaaaggatg atgttctgac tgtgatccga agagtggatg
1381 aaaactgggc tgaaggaatg ctggcagaca aaataggaat atttccaatt tcatatgttg
1441 agtttaactc ggctgctaag cagctgatag aatgggataa gcctcctgtg ccaggagttg
1501 atgctggaga atgttcctcg gcagcagccc agagcagcac tgccccaaag cactccgaca
1561 ccaagaagaa caccaaaaag cggcactcct tcacttccct cactatggcc aacaagtcct
1621 cccaggcatc ccagaaccgc cactccatgg agatcagccc ccctgtcctc atcagctcca
1681 gcaaccccac tgctgctgca cggatcagcg agctgtctgg gctctcctgc agtgcccctt
1741 ctcaggttca tataagtacc accgggttaa ttgtgacccc gcccccaagc agcccagtga
1801 caactggccc ctcgtttact ttcccatcag atgttcccta ccaagctgcc cttggaactt
1861 tgaatcctcc tcttccacca ccccctctcc tggctgccac tgtccttgcc tccacaccac
1921 caggcgccac cgccgctgct gctgctgctg gaatgggacc gaggcccatg gcaggatcca
1981 ctgaccagat tgcacattta cggccgcaga ctcgccccag tgtgtatgtt gctatatatc
2041 catacactcc tcggaaagag gatgaactag agctgagaaa aggggagatg tttttagtgt
2101 ttgagcgctg ccaggatggc tggttcaaag ggacatccat gcataccagc aagatagggg
2161 ttttccctgg caattatgtg gcaccagtca caagggcggt gacaaatgct tcccaagcta
2221 aagtccctat gtctacagct ggccagacaa gtcggggagt gaccatggtc agtccttcca
2281 cggcaggagg gcctgcccag aagctccagg gaaatggcgt ggctgggagt cccagtgttg
2341 tccccgcagc tgtggtatca gcagctcaca tccagacaag tcctcaggct aaggtcttgt
2401 tgcacatgac ggggcaaatg acagtcaacc aggcccgcaa tgctgtgagg acagttgcag
2461 cgcacaacca ggaacgcccc acggcagcag tgacacccat ccaggtacag aatgccgccg
2521 gcctcagccc tgcatctgtg ggcctgtccc atcactcgct ggcctcccca caacctgcgc
2581 ctctgatgcc aggctcagcc acgcacactg ctgccatcag tatcagtcga gccagtgccc
2641 ctctggcctg tgcagcagct gctccactga cttccccaag catcaccagt gcttctctgg
2701 aggctgagcc cagtggccgg atagtgaccg ttctccctgg actccccaca tctcctgaca
2761 gtgcttcatc agcttgtggg aacagttcag caaccaaacc agacaaggat agcaaaaaag
2821 aaaaaaaggg tttgttgaag ttgctttctg gcgcctccac taaacggaag ccccgcgtgt
2881 ctcctccagc atcgcccacc ctagaagtgg agctgggcag tgcagagctt cctctccagg
2941 gagcggtggg gcccgaactg ccaccaggag gtggccatgg cagggcaggc tcctgccctg
3001 tggacgggga cggaccggtc acgactgcag tggcaggagc agccctggcc caggatgctt
3061 ttcataggaa ggcaagttcc ctggactccg cagttcccat cgctccacct cctcgccagg
3121 cctgttcctc cctgggtcct gtcttgaatg agtctagacc tgtcgtttgt gaaaggcaca
3181 gggtggtggt ttcctatcct cctcagagtg aggcagaact tgaacttaaa gaaggagata
3241 ttgtgtttgt tcataaaaaa cgagaggatg gctggttcaa aggcacatta caacgtaatg
3301 ggaaaactgg ccttttccca ggaagctttg tggaaaacat atgaggagac tgacactgaa
3361 gaagcttaaa atcacttcac acaacaaagt agcacaaagc agtttaacag aaagagcaca
3421 tttgtggact tccagatggt caggagatga gcaaaggatt ggtatgtgac tctgatgccc
3481 cagcacagtt accccagcga gcagagtgaa gaagatgttt gtgtgggttt tgttagtctg
3541 gattcggatg tataaggtgt gccttgtact gtctgattta ctacacagag aaactttttt
3601 ttttttttta agatatatga ctaaaatgga caattgttta caaggcttaa ctaatttatt
3661 tgctttttta aacttgaact tttcgtataa tagatacgtt ctttggatta tgattttaag
3721 aaattattaa tttatgaaat gataggtaag gagaagctgg attatctcct gttgagagca
3781 agagattcgt tttgacatag agtgaatgca ttttcccctc tcctcctccc tgctaccatt
3841 atattttggg gttatgtttt gcttctttaa gatagaaatc ccagttctct aatttggttt
3901 tcttctttgg gaaaccaaac atacaaatga atcagtatca attagggcct ggggtagaga
3961 gacagaaact tgagagaaga gaagttagtg attccctctc tttctagttt ggtaggaatc
4021 accctgaaga cctagtcctc aatttaattg tgtgggtttt taattttcct agaatgaagt
4081 gactgaaaca atgagaaaga atacagcaca acccttgaac aaaatgtatt tagaaatata
4141 tttagtttta tagcagaagc agctcaattg tttggttgga aagtagggga aattgaagtt
4201 gtagtcactg tctgagaatg gctatgaagc gtcatttcac attttacccc aactgacctg
4261 catgcccagg acacaagtaa aacatttgtg agatagtggt ggtaagtgat gcactcgtgt
4321 taagtcaaag gctataagaa acactgtgaa aagttcatat tcatccattg tgattctttc
4381 cccacgtctt gcatgtatta ctggattccc acagtaatat agactgtgca tggtgtgtat
4441 atttcattgc gatttcctgt taagatgagt ttgtactcag aattgaccaa ttcaggaggt
4501 gtaaaaataa acagtgttct cttctctacc ccaaagccac tactgaccaa ggtctcttca
4561 gtgcactcgc tccctctctg gctaaggcat gcattagcca ctacacaagt cattagtgaa
4621 agtggtcttt tatgtcctcc cagcagacag acatcaagga tgagttaacc aggagactac
4681 tcctgtgact gtggagctct ggaaggcttg gtgggagtga atttgcccac accttacaat
4741 tgtggcagga tccagaagag cctgtctttt tatatccatt ccttgatgtc attggcctct
4801 cccaccgatt tcattacggt gccacgcagt catggatctg ggtagtccgg aaaacaaaag
4861 gagggaagac agcctggtaa tgaataagat ccttaccaca gttttctcat gggaaataca
4921 taataaaccc tttcatcttt tttttttcct ttaagaatta aaactgggaa atagaaacat
4981 gaactgaaaa gtcttgcaat gacaagaggt ttcatggtct taaaaagata ctttatgtgg
5041 ttgaagatga aatcattcct aaattaacct ttttttaaaa aaaaaacaat gtatattatg
5101 ttcctgtgtg ttgaatttaa aaaaaaaaat actttacttg gatattcatg taatatataa
5161 aggtttggtg aaatgaactt tagttaggaa aaagctggca tcagctttca tctgtgtaag
5221 ttgacaccaa tgtgtcataa tattctttat tttgggaaat tagtgtattt tataaaaatt
5281 ttaaaaagaa aaaagactac tacaggttaa gataattttt ttacctgtct tttctccata
5341 ttttaagcta tgtgatttga agtacctctg ttcatagttt cctggtataa agttggttaa
5401 aatttcatct gttaatagat cattaggtaa tataatgtat gggttttcta ttggtttttt
5461 gcagacagta gagggagatt ttgtaacaag ggcttgttac acagtgatat ggtaatgata
5521 aaattgcaat ttatcactcc ttttcatgtt aataatttga ggactggata aaaggtttca
5581 agattaaaat ttgatgttca aacctttgta tgtcccttgt gtcagtcctt aaaattttgc
5641 tttttaaaaa aacaaaaaaa aaaaaaaa
//