LOCUS BC051768 4452 bp mRNA linear HUM 27-OCT-2006 DEFINITION Homo sapiens patatin-like phospholipase domain containing 6, mRNA (cDNA clone MGC:54216 IMAGE:5764764), complete cds. ACCESSION BC051768 VERSION BC051768.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4452) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4452) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 98 Row: g Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31543298. FEATURES Location/Qualifiers source 1..4452 /db_xref="H-InvDB:HIT000053676" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:54216 IMAGE:5764764" /tissue_type="Brain, adult, 6 pooled whole brains" /clone_lib="NIH_MGC_114" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4452 /gene="PNPLA6" /gene_synonym="NTE" /gene_synonym="sws" /db_xref="GeneID:10908" /db_xref="HGNC:HGNC:16268" /db_xref="MIM:603197" CDS 190..4173 /gene="PNPLA6" /gene_synonym="NTE" /gene_synonym="sws" /codon_start=1 /product="patatin-like phospholipase domain containing 6" /protein_id="AAH51768.1" /db_xref="GeneID:10908" /db_xref="HGNC:HGNC:16268" /db_xref="MIM:603197" /translation="MEAPLQTGMVLGVMIGAGVAVVVTAVLILLVVRRLRVPKTPAPD GPRYRFRKRDKVLFYGRKIMRKVSQSTSSLVDTSVSATSRPRMRKKLKMLNIAKKILR IQKETPTLQRKEPPPAVLEADLTEGDLANSHLPSEVLYMLKNVRVLGHFEKPLFLELC RHMVFQRLGQGDYVFRPGQPDASIYVVQDGLLELCLPGPDGKECVVKEVVPGDSVNSL LSILDVITGHQHPQRTVSARAARDSTVLRLPVEAFSAVFTKYPESLVRVVQIIMVRLQ RVTFLALHNYLGLTNELFSHEIQPLRLFPSPGLPTRTSPVRGSKRMVSTSATDEPRET PGRPPDPTGAPLPGPTGDPVKPTSLETPSAPLLSRCVSMPGDISGLQGGPRSDFDMAY ERGRISVSLQEEASGGSLAAPARTPTQEPREQPAGACEYSYCEDESATGGCPFGPYQG RQTSSIFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGDQDVSLHFVLWGC LHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYE IMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALYRQGDRSDCTYIVLNG RLRSVIQRGSGKKELVGEYGRGDLIGVVEALTRQPRATTVHAVRDTELAKLPEGTLGH IKRRYPQVVTRLIHLLSQKILGNLQQLQGPFPAGSGLGVPPHSELTNPASNLATVAIL PVCAEVPMVAFTLELQHALQAIGPTLLLNSDIIRARLGASALDSIQEFRLSGWLAQQE DAHRIVLYQTDASLTPWTVRCLRQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQL VLLHREEGAGPTRTVEWLNMRSWCSGHLHLRCPRRLFSRRSPAKLHELYEKVFSRRAD RHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIG ALYAEERSASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTGSAFNRSIHRVFQDKQ IEDLWLPYFNVTTDITASAMRVHKDGSLWRYVRASMTLSGYLPPLCDPKDGHLLMDGG YINNLPADIARSMGAKTVIAIDVGSQDETDLSTYGDSLSGWWLLWKRLNPWADKVKVP DMAEIQSRLAYVSCVRQLEVVKSSSYCEYLRPPIDCFKTMDFGKFDQIYDVGYQYGKA VFGGWSRGNVIEKMLTDRRSTDLNESRRADVLAFPSSGFTDLAEIVSRIEPPTSYVSD GCADGEESDCLTEYEEDAGPDCSRDEGGSPEGASPSTASEMEEEKSILRQRRCLPQEP PGSATDA" BASE COUNT 898 a 1425 c 1356 g 773 t ORIGIN 1 cgccaccatc ggtcccggag tcccagtgat gctctgtgcc atagagcccc cataacttca 61 ctactacgtg atagtaaatc cccggcaaaa accagcagcg ccttgcaagc ccacgccacc 121 ccaagcatcc caggactctt ctgaaacgac tccgggctac cagatcggcc gtccagctgg 181 aatcaaccga tggaggctcc gctgcaaact ggaatggtgc ttggcgtgat gatcggggcc 241 ggagtggcgg tggtggtcac ggccgtgctc atcctcctgg tggtgcggag gctgcgagtg 301 ccaaaaaccc cagccccgga tggcccccgg tatcggttcc ggaagaggga caaagtgctc 361 ttctatggcc ggaagattat gcggaaggtg tcacaatcca cctcctccct cgtggatacc 421 tctgtctccg ccacctcccg gccacgcatg aggaagaaac tgaagatgct caacattgcc 481 aagaagatcc tgcgcatcca gaaagagacg cccacgctgc agcggaagga gcccccgccc 541 gcagtgctag aagctgacct gaccgagggc gacctggcta actcccatct gccctctgaa 601 gtgctttata tgctcaagaa cgtccgggtg ctgggccact tcgagaagcc actcttcctg 661 gagctctgcc gccacatggt cttccagcgg ctgggccagg gtgactacgt cttccggccg 721 ggccagccag atgccagcat ctacgtggtg caggacgggc tgctggagct ctgtctgcca 781 gggcctgacg ggaaggagtg tgtggtgaag gaagtggttc ctggggacag cgtcaacagc 841 cttctcagca tcctggatgt catcaccggt caccagcatc cccagcggac cgtgtctgcc 901 cgggcggccc gggactccac ggtgctgcgc ctgccggtgg aagcattctc cgcggtcttc 961 accaagtacc cggagagctt ggtgcgggtc gtgcagatca tcatggtgcg gctgcagcga 1021 gtcaccttcc tggcactgca caactacctg ggtctgacca atgagctctt cagccacgag 1081 atccagcccc tgcgtctgtt ccccagcccc ggcctcccaa ctcgcaccag ccctgtgcgg 1141 ggctccaaga gaatggtcag cacctcagct acagacgagc ccagggagac cccagggcgg 1201 ccacccgatc ccaccggggc cccgctgcct ggacctacag gggaccctgt gaagcccaca 1261 tccctggaaa ccccctcggc ccctctgctg agccgctgcg tctccatgcc aggggacatc 1321 tcaggcttgc agggtggccc ccgctccgac ttcgacatgg cctatgagcg tggccggatc 1381 tccgtgtccc tgcaggaaga ggcctccggg gggtccctgg cagcccccgc tcggaccccc 1441 actcaggagc ctcgtgagca gccggcaggc gcctgtgaat acagctactg tgaggatgag 1501 tcggccactg gtggctgccc tttcgggccc taccagggcc gccagaccag cagcatcttc 1561 gaggcagcaa agcaggagct ggccaagctg atgcggattg aggacccctc cctcctgaac 1621 agcagagtct tgctgcacca cgccaaagct ggcaccatca ttgcccgcca gggagaccag 1681 gacgtgagcc tgcacttcgt gctctggggc tgcctgcacg tgtaccagcg catgatcgac 1741 aaggcggagg acgtgtgcct gttcgtagcg cagcccgggg aactggtggg gcagctggcg 1801 gtgctcactg gcgaacctct catcttcaca ctgcgagccc aacgcgactg caccttcctg 1861 cggatctcca agtccgactt ctatgagatc atgcgcgcac agcccagtgt ggtgctgagt 1921 gcggcgcaca cggtggcagc caggatgtcg cccttcgtgc gccagatgga cttcgccatc 1981 gactggactg cagtggaggc gggacgcgcg ctgtacaggc agggcgaccg ctccgactgc 2041 acttacatcg tgctcaatgg gcggctgcgt agcgtgatcc agcgaggcag tggcaagaag 2101 gagctggtgg gcgagtacgg ccgcggcgac ctcatcggcg tggtggaggc actgacccgg 2161 cagccgcgag ccacgacggt gcacgcggtg cgcgacacgg agctggccaa gcttcccgag 2221 ggcaccttgg gtcacatcaa acgccggtac ccgcaggtcg tgacccgcct tatccaccta 2281 ctgagccaga aaattctagg gaatttgcag cagctgcaag gacccttccc agcaggctct 2341 gggttgggtg tgcccccaca ctcggaactc accaacccag ccagcaacct ggcaactgtg 2401 gcaatcctgc ctgtgtgtgc tgaggtcccc atggtggcct tcacgctgga gctgcagcac 2461 gccctgcagg ccatcggtcc gacgctactc cttaacagtg acatcatccg ggcacgcctg 2521 ggggcctccg cactggatag catccaagag ttccggctgt cagggtggct ggcccagcag 2581 gaggatgcac accgtatcgt actctaccag acggacgcct cgctgacgcc ctggaccgtg 2641 cgctgcctgc gacaggccga ctgcatcctc attgtgggcc tgggggacca ggagcctacc 2701 ctcggccagc tggagcagat gctggagaac acggctgtgc gcgcccttaa gcagctagtc 2761 ctgctccacc gagaggaggg cgcgggcccc acgcgcaccg tggagtggct aaatatgcgc 2821 agctggtgct cggggcacct gcacctgcgc tgtccgcgcc gcctcttttc gcgccgcagc 2881 cctgccaagc tgcatgagct ctacgagaag gttttctcca ggcgcgcgga ccggcacagc 2941 gacttctccc gcttggcgag ggtgctcacg gggaacacca ttgcccttgt gctaggcggg 3001 ggcggggcca ggggctgctc gcacatcgga gtactaaagg cattagagga ggcgggggtc 3061 cccgtggacc tggtgggcgg cacgtccatt ggctctttca tcggagcgtt gtacgcggag 3121 gagcgcagcg ccagccgcac gaagcagcgg gcccgggagt gggccaagag catgacttcg 3181 gtgctggaac ctgtgttgga cctcacgtac ccagtcacct ccatgttcac tgggtctgcc 3241 tttaaccgca gcatccatcg ggtcttccag gataagcaga ttgaggacct gtggctgcct 3301 tacttcaacg tgaccacaga tatcaccgcc tcagccatgc gagtccacaa agatggctcc 3361 ctgtggcggt acgtgcgcgc cagcatgacg ctgtcgggct acctgccccc gctgtgcgac 3421 cccaaggacg ggcacctact catggatggc ggctacatca acaatctgcc agcggacatc 3481 gcccgcagca tgggtgccaa aacggtcatc gccattgacg tggggagcca ggatgagacg 3541 gacctcagca cctacgggga cagcctgtcc ggctggtggc tgctgtggaa gcggctgaat 3601 ccctgggctg acaaggtaaa ggttccagac atggctgaaa tccagtcccg cctggcctac 3661 gtgtcctgtg tgcggcagct agaggttgtc aagtccagct cctactgcga gtacctgcgc 3721 ccgcccatcg actgcttcaa gaccatggac tttgggaagt tcgaccagat ctatgatgtg 3781 ggctaccagt acgggaaggc ggtgtttgga ggctggagcc gtggcaacgt cattgagaaa 3841 atgctcacag accggcggtc tacagacctt aatgagagcc gccgtgcaga cgtgcttgcc 3901 ttcccaagct ctggcttcac tgacttggca gagattgtgt cccggattga gccccccacg 3961 agctatgtct ctgatggctg tgctgacgga gaggagtcag attgtctgac agagtatgag 4021 gaggacgccg gacccgactg ctcgagggat gaaggggggt cccccgaggg cgcaagcccc 4081 agcactgcct ccgagatgga ggaggagaag tcgattctcc ggcaacgacg ctgtctgccc 4141 caggagccgc ccggctcagc cacagatgcc tgaggacctc gacaggggtc accccctccc 4201 tcccacccct ggactgggct gggggtggcc ccgtgggggt agctcactcc ccctcctgct 4261 gctatgcctg tgacccccgc ggcccacaca ctggactgac ctgccctgag cggggatgca 4321 gtgttgcact gatgacttga ccagcccctc ccccaataaa ctcgcctctt ggaaaaaaaa 4381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4441 aaaaaaaaaa aa //