LOCUS BC051768 4452 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens patatin-like phospholipase domain containing 6, mRNA
(cDNA clone MGC:54216 IMAGE:5764764), complete cds.
ACCESSION BC051768
VERSION BC051768.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4452)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4452)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: g Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543298.
FEATURES Location/Qualifiers
source 1..4452
/db_xref="H-InvDB:HIT000053676"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54216 IMAGE:5764764"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4452
/gene="PNPLA6"
/gene_synonym="NTE"
/gene_synonym="sws"
/db_xref="GeneID:10908"
/db_xref="HGNC:HGNC:16268"
/db_xref="MIM:603197"
CDS 190..4173
/gene="PNPLA6"
/gene_synonym="NTE"
/gene_synonym="sws"
/codon_start=1
/product="patatin-like phospholipase domain containing 6"
/protein_id="AAH51768.1"
/db_xref="GeneID:10908"
/db_xref="HGNC:HGNC:16268"
/db_xref="MIM:603197"
/translation="MEAPLQTGMVLGVMIGAGVAVVVTAVLILLVVRRLRVPKTPAPD
GPRYRFRKRDKVLFYGRKIMRKVSQSTSSLVDTSVSATSRPRMRKKLKMLNIAKKILR
IQKETPTLQRKEPPPAVLEADLTEGDLANSHLPSEVLYMLKNVRVLGHFEKPLFLELC
RHMVFQRLGQGDYVFRPGQPDASIYVVQDGLLELCLPGPDGKECVVKEVVPGDSVNSL
LSILDVITGHQHPQRTVSARAARDSTVLRLPVEAFSAVFTKYPESLVRVVQIIMVRLQ
RVTFLALHNYLGLTNELFSHEIQPLRLFPSPGLPTRTSPVRGSKRMVSTSATDEPRET
PGRPPDPTGAPLPGPTGDPVKPTSLETPSAPLLSRCVSMPGDISGLQGGPRSDFDMAY
ERGRISVSLQEEASGGSLAAPARTPTQEPREQPAGACEYSYCEDESATGGCPFGPYQG
RQTSSIFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGDQDVSLHFVLWGC
LHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYE
IMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALYRQGDRSDCTYIVLNG
RLRSVIQRGSGKKELVGEYGRGDLIGVVEALTRQPRATTVHAVRDTELAKLPEGTLGH
IKRRYPQVVTRLIHLLSQKILGNLQQLQGPFPAGSGLGVPPHSELTNPASNLATVAIL
PVCAEVPMVAFTLELQHALQAIGPTLLLNSDIIRARLGASALDSIQEFRLSGWLAQQE
DAHRIVLYQTDASLTPWTVRCLRQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQL
VLLHREEGAGPTRTVEWLNMRSWCSGHLHLRCPRRLFSRRSPAKLHELYEKVFSRRAD
RHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIG
ALYAEERSASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTGSAFNRSIHRVFQDKQ
IEDLWLPYFNVTTDITASAMRVHKDGSLWRYVRASMTLSGYLPPLCDPKDGHLLMDGG
YINNLPADIARSMGAKTVIAIDVGSQDETDLSTYGDSLSGWWLLWKRLNPWADKVKVP
DMAEIQSRLAYVSCVRQLEVVKSSSYCEYLRPPIDCFKTMDFGKFDQIYDVGYQYGKA
VFGGWSRGNVIEKMLTDRRSTDLNESRRADVLAFPSSGFTDLAEIVSRIEPPTSYVSD
GCADGEESDCLTEYEEDAGPDCSRDEGGSPEGASPSTASEMEEEKSILRQRRCLPQEP
PGSATDA"
BASE COUNT 898 a 1425 c 1356 g 773 t
ORIGIN
1 cgccaccatc ggtcccggag tcccagtgat gctctgtgcc atagagcccc cataacttca
61 ctactacgtg atagtaaatc cccggcaaaa accagcagcg ccttgcaagc ccacgccacc
121 ccaagcatcc caggactctt ctgaaacgac tccgggctac cagatcggcc gtccagctgg
181 aatcaaccga tggaggctcc gctgcaaact ggaatggtgc ttggcgtgat gatcggggcc
241 ggagtggcgg tggtggtcac ggccgtgctc atcctcctgg tggtgcggag gctgcgagtg
301 ccaaaaaccc cagccccgga tggcccccgg tatcggttcc ggaagaggga caaagtgctc
361 ttctatggcc ggaagattat gcggaaggtg tcacaatcca cctcctccct cgtggatacc
421 tctgtctccg ccacctcccg gccacgcatg aggaagaaac tgaagatgct caacattgcc
481 aagaagatcc tgcgcatcca gaaagagacg cccacgctgc agcggaagga gcccccgccc
541 gcagtgctag aagctgacct gaccgagggc gacctggcta actcccatct gccctctgaa
601 gtgctttata tgctcaagaa cgtccgggtg ctgggccact tcgagaagcc actcttcctg
661 gagctctgcc gccacatggt cttccagcgg ctgggccagg gtgactacgt cttccggccg
721 ggccagccag atgccagcat ctacgtggtg caggacgggc tgctggagct ctgtctgcca
781 gggcctgacg ggaaggagtg tgtggtgaag gaagtggttc ctggggacag cgtcaacagc
841 cttctcagca tcctggatgt catcaccggt caccagcatc cccagcggac cgtgtctgcc
901 cgggcggccc gggactccac ggtgctgcgc ctgccggtgg aagcattctc cgcggtcttc
961 accaagtacc cggagagctt ggtgcgggtc gtgcagatca tcatggtgcg gctgcagcga
1021 gtcaccttcc tggcactgca caactacctg ggtctgacca atgagctctt cagccacgag
1081 atccagcccc tgcgtctgtt ccccagcccc ggcctcccaa ctcgcaccag ccctgtgcgg
1141 ggctccaaga gaatggtcag cacctcagct acagacgagc ccagggagac cccagggcgg
1201 ccacccgatc ccaccggggc cccgctgcct ggacctacag gggaccctgt gaagcccaca
1261 tccctggaaa ccccctcggc ccctctgctg agccgctgcg tctccatgcc aggggacatc
1321 tcaggcttgc agggtggccc ccgctccgac ttcgacatgg cctatgagcg tggccggatc
1381 tccgtgtccc tgcaggaaga ggcctccggg gggtccctgg cagcccccgc tcggaccccc
1441 actcaggagc ctcgtgagca gccggcaggc gcctgtgaat acagctactg tgaggatgag
1501 tcggccactg gtggctgccc tttcgggccc taccagggcc gccagaccag cagcatcttc
1561 gaggcagcaa agcaggagct ggccaagctg atgcggattg aggacccctc cctcctgaac
1621 agcagagtct tgctgcacca cgccaaagct ggcaccatca ttgcccgcca gggagaccag
1681 gacgtgagcc tgcacttcgt gctctggggc tgcctgcacg tgtaccagcg catgatcgac
1741 aaggcggagg acgtgtgcct gttcgtagcg cagcccgggg aactggtggg gcagctggcg
1801 gtgctcactg gcgaacctct catcttcaca ctgcgagccc aacgcgactg caccttcctg
1861 cggatctcca agtccgactt ctatgagatc atgcgcgcac agcccagtgt ggtgctgagt
1921 gcggcgcaca cggtggcagc caggatgtcg cccttcgtgc gccagatgga cttcgccatc
1981 gactggactg cagtggaggc gggacgcgcg ctgtacaggc agggcgaccg ctccgactgc
2041 acttacatcg tgctcaatgg gcggctgcgt agcgtgatcc agcgaggcag tggcaagaag
2101 gagctggtgg gcgagtacgg ccgcggcgac ctcatcggcg tggtggaggc actgacccgg
2161 cagccgcgag ccacgacggt gcacgcggtg cgcgacacgg agctggccaa gcttcccgag
2221 ggcaccttgg gtcacatcaa acgccggtac ccgcaggtcg tgacccgcct tatccaccta
2281 ctgagccaga aaattctagg gaatttgcag cagctgcaag gacccttccc agcaggctct
2341 gggttgggtg tgcccccaca ctcggaactc accaacccag ccagcaacct ggcaactgtg
2401 gcaatcctgc ctgtgtgtgc tgaggtcccc atggtggcct tcacgctgga gctgcagcac
2461 gccctgcagg ccatcggtcc gacgctactc cttaacagtg acatcatccg ggcacgcctg
2521 ggggcctccg cactggatag catccaagag ttccggctgt cagggtggct ggcccagcag
2581 gaggatgcac accgtatcgt actctaccag acggacgcct cgctgacgcc ctggaccgtg
2641 cgctgcctgc gacaggccga ctgcatcctc attgtgggcc tgggggacca ggagcctacc
2701 ctcggccagc tggagcagat gctggagaac acggctgtgc gcgcccttaa gcagctagtc
2761 ctgctccacc gagaggaggg cgcgggcccc acgcgcaccg tggagtggct aaatatgcgc
2821 agctggtgct cggggcacct gcacctgcgc tgtccgcgcc gcctcttttc gcgccgcagc
2881 cctgccaagc tgcatgagct ctacgagaag gttttctcca ggcgcgcgga ccggcacagc
2941 gacttctccc gcttggcgag ggtgctcacg gggaacacca ttgcccttgt gctaggcggg
3001 ggcggggcca ggggctgctc gcacatcgga gtactaaagg cattagagga ggcgggggtc
3061 cccgtggacc tggtgggcgg cacgtccatt ggctctttca tcggagcgtt gtacgcggag
3121 gagcgcagcg ccagccgcac gaagcagcgg gcccgggagt gggccaagag catgacttcg
3181 gtgctggaac ctgtgttgga cctcacgtac ccagtcacct ccatgttcac tgggtctgcc
3241 tttaaccgca gcatccatcg ggtcttccag gataagcaga ttgaggacct gtggctgcct
3301 tacttcaacg tgaccacaga tatcaccgcc tcagccatgc gagtccacaa agatggctcc
3361 ctgtggcggt acgtgcgcgc cagcatgacg ctgtcgggct acctgccccc gctgtgcgac
3421 cccaaggacg ggcacctact catggatggc ggctacatca acaatctgcc agcggacatc
3481 gcccgcagca tgggtgccaa aacggtcatc gccattgacg tggggagcca ggatgagacg
3541 gacctcagca cctacgggga cagcctgtcc ggctggtggc tgctgtggaa gcggctgaat
3601 ccctgggctg acaaggtaaa ggttccagac atggctgaaa tccagtcccg cctggcctac
3661 gtgtcctgtg tgcggcagct agaggttgtc aagtccagct cctactgcga gtacctgcgc
3721 ccgcccatcg actgcttcaa gaccatggac tttgggaagt tcgaccagat ctatgatgtg
3781 ggctaccagt acgggaaggc ggtgtttgga ggctggagcc gtggcaacgt cattgagaaa
3841 atgctcacag accggcggtc tacagacctt aatgagagcc gccgtgcaga cgtgcttgcc
3901 ttcccaagct ctggcttcac tgacttggca gagattgtgt cccggattga gccccccacg
3961 agctatgtct ctgatggctg tgctgacgga gaggagtcag attgtctgac agagtatgag
4021 gaggacgccg gacccgactg ctcgagggat gaaggggggt cccccgaggg cgcaagcccc
4081 agcactgcct ccgagatgga ggaggagaag tcgattctcc ggcaacgacg ctgtctgccc
4141 caggagccgc ccggctcagc cacagatgcc tgaggacctc gacaggggtc accccctccc
4201 tcccacccct ggactgggct gggggtggcc ccgtgggggt agctcactcc ccctcctgct
4261 gctatgcctg tgacccccgc ggcccacaca ctggactgac ctgccctgag cggggatgca
4321 gtgttgcact gatgacttga ccagcccctc ccccaataaa ctcgcctctt ggaaaaaaaa
4381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4441 aaaaaaaaaa aa
//