LOCUS BC051351 3935 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone MGC:59643 IMAGE:6538324), complete cds. ACCESSION BC051351 VERSION BC051351.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3935) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3935) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 47 Row: m Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48928051. FEATURES Location/Qualifiers source 1..3935 /db_xref="H-InvDB:HIT000099326" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:59643 IMAGE:6538324" /tissue_type="Lung, epidermoid carcinoma" /clone_lib="NIH_MGC_101" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..3935 /gene="NPAS2" /gene_synonym="FLJ23138" /gene_synonym="MGC71151" /gene_synonym="MOP4" /gene_synonym="PASD4" /db_xref="GeneID:4862" /db_xref="HGNC:HGNC:7895" /db_xref="MIM:603347" CDS 251..2725 /gene="NPAS2" /gene_synonym="FLJ23138" /gene_synonym="MGC71151" /gene_synonym="MOP4" /gene_synonym="PASD4" /codon_start=1 /product="neuronal PAS domain protein 2" /protein_id="AAH51351.2" /db_xref="GeneID:4862" /db_xref="HGNC:HGNC:7895" /db_xref="MIM:603347" /translation="MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMD KTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTT DGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYL KSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRV PLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLP FEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITY HQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHF NALDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQ ELPVPGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQFSAQFSMFQTIKDQ LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ LQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRESSVISTQGPKPMRSSQLMQSSG RSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQCQPSPDFSHDRQLRLLLSQPIQP MMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPS FPASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLLLSTYSQQPGTLGYPQPPP AQPQPLRPPRRVSSLSESSGLQQPPR" BASE COUNT 989 a 1145 c 944 g 857 t ORIGIN 1 gagggacccg cgcggctgcg gcccaggagc ggcggccgcg gagcccggag acccgcagcc 61 gcggcggcgg cggcggcggc ggcagcagct agagcagcgc ctcccgccgc cgcccgggag 121 gagctcgccg cgcccgctcg ccgcctcgtc tcccagcggc ggcgggaggc gcgtctcccc 181 ggcccagtcc gcgcccggcc ccgcggggcc gctccggccc gctccgagga aaaactgcat 241 agaaaatcta atggatgaag atgagaaaga cagagccaag agagcttctc gaaacaagtc 301 tgagaagaag cgtcgggacc agttcaatgt tctcatcaaa gagctcagtt ccatgctccc 361 tggcaacacg cggaaaatgg acaaaaccac cgtgttggaa aaggtcatcg gatttttgca 421 gaaacacaat gaagtctcag cgcaaacgga aatctgtgac attcagcaag actggaagcc 481 ttcattcctc agtaatgaag aattcaccca gctgatgttg gaggcattag atggcttcat 541 tatcgcagtg acaacagacg gcagcatcat ctatgtctct gacagtatca cgcctctcct 601 tgggcattta ccgtcggatg tcatggatca gaatttgtta aatttcctcc cagaacaaga 661 acattcagaa gtttataaaa tcctttcttc ccatatgctt gtgacggatt ccccctcccc 721 agaatactta aaatctgaca gcgatttaga gttttattgc catcttctca gaggcagctt 781 gaacccaaag gaatttccaa cttatgaata cataaaattt gtaggaaatt ttcgctctta 841 caacaatgtg cctagcccct cctgtaatgg ttttgacaac accctttcaa gaccttgccg 901 ggtgccacta ggaaaggagg tttgcttcat tgccaccgtt cgtctggcaa caccacaatt 961 cttaaaggaa atgtgcatag ttgacgaacc tttagaggaa ttcacttcaa ggcatagctt 1021 ggaatggaaa tttttatttc tggatcacag agcacctcca atcataggat acctgccttt 1081 tgaagtgctg ggaacctcag gctatgacta ctaccacatt gatgacctgg agctcctggc 1141 caggtgtcac cagcacctga tgcagtttgg caaagggaag tcgtgttgct accggtttct 1201 gaccaaaggt cagcagtgga tctggctgca gactcactac tacatcacct accatcagtg 1261 gaactccaag cccgagttca tcgtgtgcac acactcggtg gtcagttacg cagatgtccg 1321 ggtggaaagg aggcaggagc tggctctgga agacccgcca tccgaggccc tccactcctc 1381 agcactaaag gacaagggct caagcctgga acctcggcag cactttaacg cactcgacgt 1441 gggtgcctcg ggccttaata ccagtcattc gccatcggcg tcctcaagaa gttcccacaa 1501 atcctcgcac acagccatgt cagaacccac ctccactccc accaagctga tggcagaggc 1561 cagcaccccg gctttgccaa gatcagccac cctgccccaa gagttacctg tccccgggct 1621 cagccaggca gccaccatgc cggcccctct gccttcccca tcgtcctgcg acctcacaca 1681 gcagctcctg cctcagaccg ttctgcagag cacgcccgct cccatggcac agttttcggc 1741 acagttcagc atgttccaga ccatcaaaga ccagctagag cagcggacgc ggatcctgca 1801 ggccaatatc cggtggcaac aggaagagct ccacaagatc caggagcagc tctgcctggt 1861 ccaggactcc aacgtccaga tgttcctgca gcagccagct gtatccctga gcttcagcag 1921 cacccagcga cctgaggctc agcagcagct acagcaaagg tcagctgcag tgactcagcc 1981 ccagctcggg gcgggccccc aacttccagg gcagatctcc tctgcccagg tcacaagcca 2041 gcacctgctc agagaatcaa gtgtgatatc aacccagggt ccaaagccaa tgagaagctc 2101 acagctaatg cagagcagcg gccgctctgg aagcagccta gtgtccccgt tcagcagcgc 2161 cacagctgcg ctcccgccaa gtctgaatct gaccacacct gcttccacct cccaggatgc 2221 cagccagtgc cagcccagcc cagacttcag ccatgatcgg cagctcaggc tgttgctgag 2281 ccagcccatc cagcccatga tgcccgggtc ctgtgacgca aggcagccct cggaagtcag 2341 caggacggga cggcaagtca agtacgccca gagccagact gtgtttcaaa atccagacgc 2401 acaccccgcc aacagcagca gcgccccgat gcccgtcctg ctgatggggc aggcggtgct 2461 ccaccccagc ttccctgcct cccaaccatc gcccctgcag cctgcacagg cccggcagca 2521 gccaccgcag cactacctgc aggtacaggc accaacctct ttgcacagtg agcagcagga 2581 ctcgctactt ctctccacct actcacaaca gccagggacc ctgggctacc cccaaccacc 2641 cccagcacag ccccagcccc tacgtcctcc ccgaagggtc agcagtctgt ctgagtcgtc 2701 aggcctccag cagccgcccc gataatgccc cggcactgaa gtcgggacac aatcagcttt 2761 aaccaatgga tgaggggggt ggccacagga gatggggaga ggagtctgaa ctaaacccct 2821 ggcttttgtg cacactgcat acgtttcaga actcctggat ggtaaccatc tctggagtgc 2881 agcgcttgct gcagtggaaa tgatcaggaa tactgaccgt gtttctcttg cctccgaggt 2941 tcttgggcac actctatagc catactggac aggaaccagg tgccccgtgt aggcatcgtc 3001 ggtcggtttg ccgtcagaga tggcgcatct cgctgcatcc cccgagagta caccggttgc 3061 tctagccacc tgcggcccgc ccatctgcgc tagctggcct tcacgctctt gatcgtcttt 3121 cctttgtatt ggagaaggac tgggtcagag atctgttgga gagagagaat aaagagatta 3181 tttttcatta tttttaaatg gttgtttttg ttttaatttg cacagctaca cagaggaaat 3241 aacttaggta ctttctgttt ttttaaaaaa aataataagg tctcatggct tcattcagag 3301 accacagtaa caacagcagc ccaccaatca gagaagctgg ttgttattaa ccaagctaca 3361 gattcacact ttctggccta aaccctaatg ggatgaggct tttcacccca ggccatgctg 3421 gtggtgattt tttagcccct aaataaaaca ctggactatt tcctgtttac ttcattgatt 3481 gcaactacaa aggtggactc aaagcaaagc acaatcatgc cagccaacat tccagaattc 3541 tgctgagaac tccaagtctg tgaggggaga ggttttacaa gccagacagg cctgggggac 3601 tgcagtcccc aaggagaccc tgccacatgc tggccctttg agtgagaatg ctgcatcttt 3661 ctacatatct tcatgagaat actgagaatt ggattttcct tttcaaaatg cactttgctt 3721 tttttgtatg ttttgttatg ttgagatgtt tctaaagaaa agattttatg taattataag 3781 atgaagcgta gtgaattgta cagctgttgt aataatgacc tatttctata taaaataaaa 3841 ttgtatggct tatgtgtaaa ttattttgta tctgagatac cagttccttt tcccaaatat 3901 aaaagtataa aagttaaaaa aaaaaaaaaa aaaaa //