LOCUS BC051351 3935 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone
MGC:59643 IMAGE:6538324), complete cds.
ACCESSION BC051351
VERSION BC051351.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3935)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3935)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 47 Row: m Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48928051.
FEATURES Location/Qualifiers
source 1..3935
/db_xref="H-InvDB:HIT000099326"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:59643 IMAGE:6538324"
/tissue_type="Lung, epidermoid carcinoma"
/clone_lib="NIH_MGC_101"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..3935
/gene="NPAS2"
/gene_synonym="FLJ23138"
/gene_synonym="MGC71151"
/gene_synonym="MOP4"
/gene_synonym="PASD4"
/db_xref="GeneID:4862"
/db_xref="HGNC:HGNC:7895"
/db_xref="MIM:603347"
CDS 251..2725
/gene="NPAS2"
/gene_synonym="FLJ23138"
/gene_synonym="MGC71151"
/gene_synonym="MOP4"
/gene_synonym="PASD4"
/codon_start=1
/product="neuronal PAS domain protein 2"
/protein_id="AAH51351.2"
/db_xref="GeneID:4862"
/db_xref="HGNC:HGNC:7895"
/db_xref="MIM:603347"
/translation="MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMD
KTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTT
DGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYL
KSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRV
PLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLP
FEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITY
HQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHF
NALDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQ
ELPVPGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQFSAQFSMFQTIKDQ
LEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ
LQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRESSVISTQGPKPMRSSQLMQSSG
RSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQCQPSPDFSHDRQLRLLLSQPIQP
MMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPS
FPASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLLLSTYSQQPGTLGYPQPPP
AQPQPLRPPRRVSSLSESSGLQQPPR"
BASE COUNT 989 a 1145 c 944 g 857 t
ORIGIN
1 gagggacccg cgcggctgcg gcccaggagc ggcggccgcg gagcccggag acccgcagcc
61 gcggcggcgg cggcggcggc ggcagcagct agagcagcgc ctcccgccgc cgcccgggag
121 gagctcgccg cgcccgctcg ccgcctcgtc tcccagcggc ggcgggaggc gcgtctcccc
181 ggcccagtcc gcgcccggcc ccgcggggcc gctccggccc gctccgagga aaaactgcat
241 agaaaatcta atggatgaag atgagaaaga cagagccaag agagcttctc gaaacaagtc
301 tgagaagaag cgtcgggacc agttcaatgt tctcatcaaa gagctcagtt ccatgctccc
361 tggcaacacg cggaaaatgg acaaaaccac cgtgttggaa aaggtcatcg gatttttgca
421 gaaacacaat gaagtctcag cgcaaacgga aatctgtgac attcagcaag actggaagcc
481 ttcattcctc agtaatgaag aattcaccca gctgatgttg gaggcattag atggcttcat
541 tatcgcagtg acaacagacg gcagcatcat ctatgtctct gacagtatca cgcctctcct
601 tgggcattta ccgtcggatg tcatggatca gaatttgtta aatttcctcc cagaacaaga
661 acattcagaa gtttataaaa tcctttcttc ccatatgctt gtgacggatt ccccctcccc
721 agaatactta aaatctgaca gcgatttaga gttttattgc catcttctca gaggcagctt
781 gaacccaaag gaatttccaa cttatgaata cataaaattt gtaggaaatt ttcgctctta
841 caacaatgtg cctagcccct cctgtaatgg ttttgacaac accctttcaa gaccttgccg
901 ggtgccacta ggaaaggagg tttgcttcat tgccaccgtt cgtctggcaa caccacaatt
961 cttaaaggaa atgtgcatag ttgacgaacc tttagaggaa ttcacttcaa ggcatagctt
1021 ggaatggaaa tttttatttc tggatcacag agcacctcca atcataggat acctgccttt
1081 tgaagtgctg ggaacctcag gctatgacta ctaccacatt gatgacctgg agctcctggc
1141 caggtgtcac cagcacctga tgcagtttgg caaagggaag tcgtgttgct accggtttct
1201 gaccaaaggt cagcagtgga tctggctgca gactcactac tacatcacct accatcagtg
1261 gaactccaag cccgagttca tcgtgtgcac acactcggtg gtcagttacg cagatgtccg
1321 ggtggaaagg aggcaggagc tggctctgga agacccgcca tccgaggccc tccactcctc
1381 agcactaaag gacaagggct caagcctgga acctcggcag cactttaacg cactcgacgt
1441 gggtgcctcg ggccttaata ccagtcattc gccatcggcg tcctcaagaa gttcccacaa
1501 atcctcgcac acagccatgt cagaacccac ctccactccc accaagctga tggcagaggc
1561 cagcaccccg gctttgccaa gatcagccac cctgccccaa gagttacctg tccccgggct
1621 cagccaggca gccaccatgc cggcccctct gccttcccca tcgtcctgcg acctcacaca
1681 gcagctcctg cctcagaccg ttctgcagag cacgcccgct cccatggcac agttttcggc
1741 acagttcagc atgttccaga ccatcaaaga ccagctagag cagcggacgc ggatcctgca
1801 ggccaatatc cggtggcaac aggaagagct ccacaagatc caggagcagc tctgcctggt
1861 ccaggactcc aacgtccaga tgttcctgca gcagccagct gtatccctga gcttcagcag
1921 cacccagcga cctgaggctc agcagcagct acagcaaagg tcagctgcag tgactcagcc
1981 ccagctcggg gcgggccccc aacttccagg gcagatctcc tctgcccagg tcacaagcca
2041 gcacctgctc agagaatcaa gtgtgatatc aacccagggt ccaaagccaa tgagaagctc
2101 acagctaatg cagagcagcg gccgctctgg aagcagccta gtgtccccgt tcagcagcgc
2161 cacagctgcg ctcccgccaa gtctgaatct gaccacacct gcttccacct cccaggatgc
2221 cagccagtgc cagcccagcc cagacttcag ccatgatcgg cagctcaggc tgttgctgag
2281 ccagcccatc cagcccatga tgcccgggtc ctgtgacgca aggcagccct cggaagtcag
2341 caggacggga cggcaagtca agtacgccca gagccagact gtgtttcaaa atccagacgc
2401 acaccccgcc aacagcagca gcgccccgat gcccgtcctg ctgatggggc aggcggtgct
2461 ccaccccagc ttccctgcct cccaaccatc gcccctgcag cctgcacagg cccggcagca
2521 gccaccgcag cactacctgc aggtacaggc accaacctct ttgcacagtg agcagcagga
2581 ctcgctactt ctctccacct actcacaaca gccagggacc ctgggctacc cccaaccacc
2641 cccagcacag ccccagcccc tacgtcctcc ccgaagggtc agcagtctgt ctgagtcgtc
2701 aggcctccag cagccgcccc gataatgccc cggcactgaa gtcgggacac aatcagcttt
2761 aaccaatgga tgaggggggt ggccacagga gatggggaga ggagtctgaa ctaaacccct
2821 ggcttttgtg cacactgcat acgtttcaga actcctggat ggtaaccatc tctggagtgc
2881 agcgcttgct gcagtggaaa tgatcaggaa tactgaccgt gtttctcttg cctccgaggt
2941 tcttgggcac actctatagc catactggac aggaaccagg tgccccgtgt aggcatcgtc
3001 ggtcggtttg ccgtcagaga tggcgcatct cgctgcatcc cccgagagta caccggttgc
3061 tctagccacc tgcggcccgc ccatctgcgc tagctggcct tcacgctctt gatcgtcttt
3121 cctttgtatt ggagaaggac tgggtcagag atctgttgga gagagagaat aaagagatta
3181 tttttcatta tttttaaatg gttgtttttg ttttaatttg cacagctaca cagaggaaat
3241 aacttaggta ctttctgttt ttttaaaaaa aataataagg tctcatggct tcattcagag
3301 accacagtaa caacagcagc ccaccaatca gagaagctgg ttgttattaa ccaagctaca
3361 gattcacact ttctggccta aaccctaatg ggatgaggct tttcacccca ggccatgctg
3421 gtggtgattt tttagcccct aaataaaaca ctggactatt tcctgtttac ttcattgatt
3481 gcaactacaa aggtggactc aaagcaaagc acaatcatgc cagccaacat tccagaattc
3541 tgctgagaac tccaagtctg tgaggggaga ggttttacaa gccagacagg cctgggggac
3601 tgcagtcccc aaggagaccc tgccacatgc tggccctttg agtgagaatg ctgcatcttt
3661 ctacatatct tcatgagaat actgagaatt ggattttcct tttcaaaatg cactttgctt
3721 tttttgtatg ttttgttatg ttgagatgtt tctaaagaaa agattttatg taattataag
3781 atgaagcgta gtgaattgta cagctgttgt aataatgacc tatttctata taaaataaaa
3841 ttgtatggct tatgtgtaaa ttattttgta tctgagatac cagttccttt tcccaaatat
3901 aaaagtataa aagttaaaaa aaaaaaaaaa aaaaa
//