LOCUS BC051025 5272 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens HMG box domain containing 3, mRNA (cDNA clone IMAGE:4914524), partial cds. ACCESSION BC051025 VERSION BC051025.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5272) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5272) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-APR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 93 Row: e Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: GenomeScan gene prediction. FEATURES Location/Qualifiers source 1..5272 /db_xref="H-InvDB:HIT000099282" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4914524" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..5272 /gene="HMGXB3" /gene_synonym="SMF" /db_xref="GeneID:22993" /db_xref="HGNC:HGNC:28982" CDS <1..4321 /gene="HMGXB3" /gene_synonym="SMF" /codon_start=2 /product="HMGXB3 protein" /protein_id="AAH51025.1" /db_xref="GeneID:22993" /db_xref="HGNC:HGNC:28982" /translation="SVVCRYCRCSRQTGASVTTVSLPSSSSSPGLDPRGPRQASVRSL RSEPVLLFLPFRTPYRDSEEGKREGLSRLRAVCRRAGPRGRGSFSPRDARASPRLHFL VAAVTTGAASRRQRGARVRQPSPSSSRRAKRLRECERRSLHAPPAMDASYDGTEVTVV MEEIEEAYCYTSPGPPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKVQQELPHLPQSE INKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSD YIIIPKSSLQEDRSCPQLELCVAQNQMSPKGPPLVSNTAPETVPSHAGMAEQCLAVEA LAEEVGALTQSGAVQEIATSEILSQDVLLEDASLEVGESHQPYQTSLVIEETLVNGSP DLPTGSLAVPHPQVGESVSVVTVMRDSSESSSSAPATQFIMLPLPAYSVVENPTSIKL TTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPAKVKVELASGV SSKGSVVKRNQQPVTTEQNSSKENASKLTLENSEAVSQLLNVAPPREVGEESEWEEVI ISDAHVLVKEAPGNCGTAVTKTPVVKSGVQPEVTLGTTDNDSPGADVPTPSEGTSTSS PLPAPKKPTGVDLLTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGL PRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVKLPSGPSNRTSQVKVV EVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGVNLAK DRTEKTTKAIEVSSPLPDVLNATEPLSTAQREIQRQSTLQLLRKVLQIPENESELAEV FALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGP QECWLLTASRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRN QIKLGEDPRVSINVVLKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMI CGICGVAPKVEMAQRSEENVLALKSVEFTWPEFLGSNEVNVEDFWATMETEVIEQVAF PASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQPVPGSGSALVRLLQEGTCK LDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGARAIRPPRHFTG GKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYP ELTNQMWGRNQGCFSSPTEPPVSVSCPELLDQHYTVDMTETEHSIQHPVTKTATRRIV HAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNGVRQRPIAFDNATHYYLY NRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVAQIKTETEEEGEEEEVAA VAE" BASE COUNT 1213 a 1480 c 1469 g 1110 t ORIGIN 1 atccgtggtg tgccgctact gccggtgcag ccgccaaacc ggtgcctcgg tgacgaccgt 61 gtccctgccg tcttcctcga gctccccggg gcttgacccc cggggccctc ggcaggcatc 121 ggtgaggagc ctgcggagcg aacctgtgct cctattcttg cccttcagga ccccatatcg 181 cgactccgag gaggggaagc gagaggggct gtcgcgactc cgcgccgtgt gtcgccgggc 241 ggggccgcgg ggccggggct ccttcagccc ccgggatgcg cgcgcgagcc ctcgcctcca 301 cttccttgtt gctgctgtca cgactggagc cgcctctcgc cgacagcggg gagcgcgagt 361 gcgccagcca tccccctcgt ccagccgccg ggccaagcgc ctccgggaat gtgagcggcg 421 cagcttgcac gctcctccgg ccatggacgc atcatatgat ggtactgagg taactgtcgt 481 gatggaggaa attgaggaag cctattgtta cacctctcct gggccaccca agaagaagaa 541 aaagtataaa atacatggag aaaagacaaa gaaacccagg tctgcttacc ttctgtacta 601 ttacgacatc tacctgaaag tgcagcagga gctcccccac ctccctcagt ctgagatcaa 661 taagaagatt agtgagagtt ggaggcttct cagcgtggcc gagaggagtt actacttgga 721 gaaagccaaa ctagagaagg aaggtttgga tcctaactct aagctctctg cactgactgc 781 tgtggttccg gacatcccag gtttccgcaa gatcctccca cgctcagatt atatcatcat 841 ccccaagagc agcctgcagg aggaccggag ctgccctcag ctagagctat gtgtggctca 901 gaaccagatg tccccgaaag gacctcctct tgtgtccaac actgccccgg agacagtgcc 961 cagccatgca ggcatggcag agcagtgcct ggctgtggag gccctggctg aggaggtggg 1021 agcccttacc cagtcaggtg ctgtacagga gattgccacc tcagagatcc tcagccagga 1081 tgtgctccta gaggacgctt ccctagaagt aggggagagc caccaacctt accagacaag 1141 cctggtaatt gaagagacct tggtgaatgg ctcaccagac ctccccactg gaagcctggc 1201 tgtgccccac ccccaggttg gggagagtgt atcagtggta acagtcatga gggattccag 1261 tgagagtagc tcctctgcac cagccacaca gttcatcatg ttgcctctgc ctgcctactc 1321 ggttgtggag aaccccacct ccatcaaact gaccactaca tatacccgcc ggggccatgg 1381 gacatgcacc agcccagggt gctcctttac atatgtcacc aggcacaagc cacctaagtg 1441 ccctacctgt ggtaacttcc taggagggaa gtggatccca aaggaaaagc cagccaaagt 1501 aaaagtggaa ttggcttctg gcgtctcttc caaaggctct gtggtgaaaa gaaatcagca 1561 acctgtcacc actgagcaaa attcctctaa ggaaaatgcc tccaaactga ctctggagaa 1621 ttcggaagct gtaagccagc tcctgaacgt agctcctccc agagaagtag gtgaggagag 1681 tgagtgggag gaagtgatca tctccgatgc ccatgttttg gttaaggaag ctcccgggaa 1741 ttgtggtaca gcagtcacta agacgccagt cgtcaaaagt ggtgtgcagc ctgaggtcac 1801 tctggggaca actgacaatg acagtcctgg agcagacgta ccaacaccat ccgaggggac 1861 aagtacctcc agtccactcc ctgctcctaa aaaacctaca ggagttgacc tgcttacccc 1921 tgggtccaga gctccagagc ttaaaggcag agcacggggc aagccctcat tactggctgc 1981 agcaagaccc atgagagcaa ttttgccagc cccagttaac gtggggcgag gcagcagcat 2041 gggactgccc agggccaggc aggccttttc cctgagtgat aagactccct ctgtgaggac 2101 ttgtggtctg aagccaagca cactgaagca gctgggccag cccattcaac agccatctgg 2161 ccctggtgag gtgaagctac caagtggccc atccaacagg acttctcagg tgaaagttgt 2221 ggaggtcaag cccgatatgt tccctccata taagtacagc tgcactgtca cattggattt 2281 gggcctggct acatcaagag gccggggaaa gtgcaagaat ccctcttgta gctatgtcta 2341 caccaacagg cacaaacctc gaatttgtcc cagctgtggt gttaaccttg ccaaagaccg 2401 gactgagaaa accaccaagg ctatcgaggt gagctcacca ctcccagatg tactgaatgc 2461 cacagagccc ctgagcacag cccagaggga gatccagcgc cagtccacac tgcagctgct 2521 gcgcaaagtc ctgcagattc ctgagaatga gtcagagctg gctgaggtct tcgccttgat 2581 tcatgaactc aacagctctc gacttatctt gtccaacgtg agtgaggaga cagtcaccat 2641 cgagcaaacc tcttggtcga attattatga gtctccgtcc acgcagtgcc ttctctgtag 2701 cagcccatta ttcaaagggg gacaaaactc cctggctggg ccccaggagt gctggctgct 2761 gacagccagc cgtctgcaga cagtgactgc ccaggtgaag atgtgtctga acccccattg 2821 tctggccctg cacagcttca tagacatcta cacaggtctc tttaatgtgg ggaacaagct 2881 gctggtaagc ctggacttgc tttttgcaat cagaaatcag atcaagctcg gagaggaccc 2941 cagagtgtcc atcaatgttg ttctgaagtc ggtgcaggag cagacagaga agactctgac 3001 ctcggaggag ctgagccagc tgcaggagct gctgtgcaat ggctattggg cctttgagtg 3061 cctcactgtc cgagactaca atgacatgat ctgtggcatc tgtggtgtgg cccccaaagt 3121 ggaaatggct cagaggagtg aagagaatgt gctagcactg aagagcgtgg agttcacctg 3181 gcctgaattc ctgggctcta atgaggtaaa tgtggaggac ttttgggcca cgatggagac 3241 agaggtgatt gagcaggtgg catttcctgc cagcatccct atcaccaaat ttgatgcgtc 3301 tgttattgcc cccttcttcc caccactcat gagaggagct gtggtcgtca acactgagaa 3361 agacaaaaac ctggatgtgc agccagtacc tggcagtggc agtgccttgg tgaggctgct 3421 ccaggagggc acctgcaagc ttgatgagat tggctcctac agtgaagaga agctgcagca 3481 cctgctaagg cagtgtggaa tcccctttgg ggcagaagac tccaaggacc agctctgctt 3541 ctccttgttg gccctctacg aatctgtaca gaatggagct agagctatac ggcccccacg 3601 tcacttcaca ggtggtaaaa tctacaaggt gtgcccccat caggtggtct gcggctccaa 3661 gtatcttgtg cgaggtgaga gtgcccgtga ccatgtggac ctgcttgcct cttcccgcca 3721 ctggccgcct gtctatgtgg tagatatggc cacgtcagtg gccctgtgtg ctgacctctg 3781 ctacccagag ctgactaacc agatgtgggg gaggaaccag ggctgtttct ctagccccac 3841 agagccacct gtgagtgtgt cctgcccaga gctcttggac cagcattata ctgtggacat 3901 gacagaaact gagcactcta tccagcaccc agtcaccaag actgccacgc ggcgcatcgt 3961 ccatgcaggc ctacagccca atcctggtga ccccagtgct gggcaccact ccttggccct 4021 gtgccctgaa ttggcacctt acgcaaccat cctggcctcc atcgtggaca gcaaaccaaa 4081 cggtgtccgc cagcggccca ttgccttcga caatgccact cactattacc tctacaaccg 4141 cctcatggac ttcctcacca gccgcgaaat tgtcaatcgt cagatccatg acattgtaca 4201 gagctgccag cctggtgagg tggtcattcg tgacaccctc taccgccttg gggttgctca 4261 gatcaagaca gagacagagg aggagggtga ggaagaggag gtggccgcag tggcagaata 4321 agccaggctg ttgtacaggg actacaccat ctctcaagcc atagtaaggc ccttgcctga 4381 ggcagagcta tccaggggac ctgcagaagt ggtctcctgt ggggagggcc tctgactgct 4441 gggactgacc aaagagcttc cattccctga gcatggtggg acccagggtc ctcagttctc 4501 aaccctccag gggtcaggag tggtaccagg aaacctcttc tggccccgag agagcacttg 4561 ggggacacgg tatgtttaat ggaggggagg ctgagggaaa ggctggtagc tggtgggttc 4621 cgtggggcct gctgtgtggg tcagggtgga ggtcctgggt gggctaaggc gtgagcccca 4681 gcactaggtg ggaaggctgc tgaggtctct cccacccctg aggagccctg gtttcagccc 4741 cctcagtctg atgaattgct tagcctgttg cctttgacta ggggcctggg tggcctcatt 4801 aactctaggg gtccctttgg gctcttgatt ctccctgaag gagggatgca tttctctctt 4861 gctcttcctg tacccacatt tgggggaagc tgaggaggga ggaacagtca gccacagctc 4921 tcttccagca ctgtcctctc caccccaagc tttgaggaag agcatcccct tcctcctttc 4981 cctggccact gctgctgcag ccaatatcct ctctgggcct gggaccctct ccacagaggg 5041 gatgtggtcc ctggtcatga cataacctag cagcagtagg aaaaactccc ttctatgaag 5101 gggaagcaga ctgggccata aggaaacagc aggactggct caagtgccca aggtttgttt 5161 agggcctggg aattggccat gtgttaattt attgagtgga gtaggtggct ttttttccct 5221 ccctcttccc ccaacaagaa taaagtttat taaattaaaa aaaaaaaaaa aa //