LOCUS BC045826 1936 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens non-protein coding RNA 153, mRNA (cDNA clone MGC:51171 IMAGE:5262165), complete cds. ACCESSION BC045826 VERSION BC045826.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1936) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1936) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 90 Row: n Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 32189414 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..1936 /db_xref="H-InvDB:HIT000098245" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:51171 IMAGE:5262165" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1936 /gene="NCRNA00153" /gene_synonym="HT013" /db_xref="GeneID:55857" /db_xref="HGNC:HGNC:15865" CDS 167..1879 /gene="NCRNA00153" /gene_synonym="HT013" /codon_start=1 /product="NCRNA00153 protein" /protein_id="AAH45826.1" /db_xref="GeneID:55857" /db_xref="HGNC:HGNC:15865" /translation="MQLEYETQIKKMLCSKDSLGLKEELTDEDREKVAVQEGINSGTA MSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTD SCVVQTSNDTQCLNKSDNIDGKASLQIGEKTPVTASVLSEEEQTHCLEIGSNTRHGKS NLSEGKKSAELNSPLRERLSPENRTTDLKCDSSSGSEGEILTREHIEVEEKRASPPVS PIPVSEYCESENKWSQEKHSPWEGVSDHLAHREPKSQKPFRKMQEEEEESWSTSSDLT ISISEDDLILESPEPQPNPGGKMEGEDGIEALKLIHAEQERVALSTEKNCILQTLSSP DSEKESSTNAPTREPGQTPDSDVPRAQVGQHVATLKEHDNSVKEEATALLRKALTEEC GRRSAIHSSESSCSLPSILNDNSGIKEAKPAVWLNSVPTREQEVSSGCGDKSKKENVA ADIPITETEAYQLLKKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKI ASEASFSSSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSD DFYD" BASE COUNT 677 a 403 c 449 g 407 t ORIGIN 1 gctggcgcag cggcagcagc atgagccgga ccctcgcatc ggccgtgccc ctgtcgagtc 61 ccgactacta cgagaggctg ggccaactcc agcacgggct gcgggacagt gaaaagaaga 121 gattggacct ggaaaagaaa ctttatgaat ataatcagtc tgatacatgc agctcgaata 181 tgagactcaa attaagaaga tgctatgctc aaaagatagc ctgggactaa aagaggaact 241 gacagatgaa gacagagaaa aggttgcagt gcaggagggg attaactcag gaacagccat 301 gtcaagagga ttgtatcaac cagcaacaat ctttatgggc cgccaaatgt cagccatctt 361 aagcatgaga gatttcagta cagagcacaa atctccccag cccacaaaga acttttcaat 421 tcctgaccca cattcacacc gacagacagc ccagagcagt aatgtgacag acagctgtgt 481 agtacaaact agtaatgaca cacagtgctt aaataagtct gacaacatag atggaaaggc 541 atctcttcag attggtgaga aaacgccagt cacagccagt gtattgtctg aggaggaaca 601 aactcattgc ttggagatag gaagtaacac acgtcatggc aagagtaatt tatctgaagg 661 caaaaagtct gctgaactca attccccgtt acgggaaaga ttaagtccag agaacagaac 721 cactgattta aagtgtgaca gttccagcgg atcagaggga gaaatactga cacgggaaca 781 tattgaagtt gaggaaaaaa gagccagccc gccagtctct ccgataccag tttcagaata 841 ctgtgaatct gaaaataagt ggtctcaaga gaagcattct ccttgggaag gtgtttcaga 901 tcatcttgct cacagggaac caaagtcaca aaagcccttc agaaaaatgc aggaagagga 961 ggaggaaagt tggagcacca gcagtgacct taccatttca ataagtgaag atgatctgat 1021 tttagagagc ccagaaccac agccaaatcc aggtggcaag atggagggag aagatggaat 1081 agaggcctta aaattaatcc atgctgagca agaaagagtt gccctatcca ctgaaaaaaa 1141 ttgtattttg caaaccctaa gctctcctga ttcagaaaag gaatcctcca ctaacgcacc 1201 aacaagagaa cctggacaaa caccagactc agacgtaccg agggcacagg tgggtcagca 1261 tgttgccacc ttgaaagaac atgataattc tgtcaaagaa gaggcaacag cattattgag 1321 aaaagccctt acagaagagt gtggccgtag gtcagctatt cacagtagtg aatcatcttg 1381 cagcttgcca tctattctga atgacaatag tggaataaag gaagccaaac ctgctgtatg 1441 gctcaacagt gttcctacaa gggaacaaga agtttcaagt ggctgtggag acaagagcaa 1501 gaaagaaaat gtggctgcag atatcccaat cacagaaaca gaagcctatc agttgctgaa 1561 gaaggccacc cttcaggata atacaaatca aactgaaaac aggtttcaaa agacagatgc 1621 ttctgtgtca cacttgtcag gtttgaatat tggcagcggt gcattcgaga caaagacagc 1681 taacaaaatt gcttcggaag ctagtttttc atctagtgaa ggaagtcctt tgtcaaggca 1741 tgaaaacaaa aagaaacccg tgatcaattt aaaatctaat gccctctggg atgagtctga 1801 tgacagtaac tcagaaattg aggctgcttt acgccccaga aaccataaca ccgatgattc 1861 tgatgatttt tatgactaac gtgctgtgac attggtttca aataaagtct ttaaacaaac 1921 taaaaaaaaa aaaaaa //